data_CM7
#
_chem_comp.id CM7
_chem_comp.name
"N-[(1S,2R)-1-benzyl-2-hydroxy-3-{[3-(trifluoromethyl)benzyl]amino}propyl]-7-ethyl-1-methyl-3,4-dihydro-1H-[1,2,5]thiadiazepino[3,4,5-hi]indole-9-carboxamide 2,2-dioxide"
_chem_comp.type non-polymer
_chem_comp.pdbx_type ?
_chem_comp.formula "C32 H35 F3 N4 O4 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-02-05
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 628.705
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code CM7
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2VNN
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
CM7 C01 C01 C 0 1 N N N N N N 28.029 -3.713 34.022 28.029 -3.713 34.022 C01 CM7 1
CM7 C02 C02 C 0 1 N N N N N N 29.517 -4.101 34.084 29.517 -4.101 34.084 C02 CM7 2
CM7 C03 C03 C 0 1 Y N N N N N 30.188 -3.472 35.327 30.188 -3.472 35.327 C03 CM7 3
CM7 C04 C04 C 0 1 Y N N N N N 30.703 -4.196 36.476 30.703 -4.196 36.476 C04 CM7 4
CM7 N05 N05 N 0 1 Y N N N N N 31.179 -3.210 37.348 31.179 -3.210 37.348 N05 CM7 5
CM7 C06 C06 C 0 1 N N N N N N 31.834 -3.752 38.596 31.834 -3.752 38.596 C06 CM7 6
CM7 C07 C07 C 0 1 N N N N N N 31.867 -3.021 39.948 31.867 -3.021 39.948 C07 CM7 7
CM7 S08 S08 S 0 1 N N N N N N 31.438 -1.232 39.779 31.438 -1.232 39.779 S08 CM7 8
CM7 O09 O09 O 0 1 N N N N N N 31.870 -0.515 41.008 31.870 -0.515 41.008 O09 CM7 9
CM7 O10 O10 O 0 1 N N N N N N 29.997 -1.253 39.678 29.997 -1.253 39.678 O10 CM7 10
CM7 N11 N11 N 0 1 N N N N N N 32.054 -0.468 38.571 32.054 -0.468 38.571 N11 CM7 11
CM7 C12 C12 C 0 1 N N N N N N 33.464 -0.032 38.578 33.464 -0.032 38.578 C12 CM7 12
CM7 C13 C13 C 0 1 Y N N N N N 31.446 -0.526 37.234 31.446 -0.526 37.234 C13 CM7 13
CM7 C14 C14 C 0 1 Y N N N N N 31.140 0.618 36.438 31.140 0.618 36.438 C14 CM7 14
CM7 C15 C15 C 0 1 Y N N N N N 30.506 0.427 35.195 30.506 0.427 35.195 C15 CM7 15
CM7 C16 C16 C 0 1 Y N N N N N 30.107 -0.892 34.676 30.107 -0.892 34.676 C16 CM7 16
CM7 C17 C17 C 0 1 Y N N N N N 30.409 -2.059 35.523 30.409 -2.059 35.523 C17 CM7 17
CM7 C18 C18 C 0 1 Y N N N N N 31.059 -1.873 36.773 31.059 -1.873 36.773 C18 CM7 18
CM7 C19 C19 C 0 1 N N N N N N 30.272 1.693 34.430 30.272 1.693 34.430 C19 CM7 19
CM7 O20 O20 O 0 1 N N N N N N 31.198 2.444 34.244 31.198 2.444 34.244 O20 CM7 20
CM7 N21 N21 N 0 1 N N N N N N 29.083 1.702 33.642 29.083 1.702 33.642 N21 CM7 21
CM7 C22 C22 C 0 1 N N S N N N 28.893 2.629 32.537 28.893 2.629 32.537 C22 CM7 22
CM7 C23 C23 C 0 1 N N N N N N 28.185 1.793 31.429 28.185 1.793 31.429 C23 CM7 23
CM7 C24 C24 C 0 1 Y N N N N N 28.913 0.447 31.166 28.913 0.447 31.166 C24 CM7 24
CM7 C25 C25 C 0 1 Y N N N N N 30.365 0.381 31.030 30.365 0.381 31.030 C25 CM7 25
CM7 C26 C26 C 0 1 Y N N N N N 30.994 -0.890 30.782 30.994 -0.890 30.782 C26 CM7 26
CM7 C27 C27 C 0 1 Y N N N N N 30.157 -2.092 30.666 30.157 -2.092 30.666 C27 CM7 27
CM7 C28 C28 C 0 1 Y N N N N N 28.719 -2.033 30.799 28.719 -2.033 30.799 C28 CM7 28
CM7 C29 C29 C 0 1 Y N N N N N 28.088 -0.755 31.042 28.088 -0.755 31.042 C29 CM7 29
CM7 C30 C30 C 0 1 N N R N N N 27.981 3.761 33.052 27.981 3.761 33.052 C30 CM7 30
CM7 O31 O31 O 0 1 N N N N N N 27.643 4.605 31.933 27.643 4.605 31.933 O31 CM7 31
CM7 C32 C32 C 0 1 N N N N N N 28.737 4.658 34.076 28.737 4.658 34.076 C32 CM7 32
CM7 N33 N33 N 0 1 N N N N N N 27.831 5.788 34.449 27.831 5.788 34.449 N33 CM7 33
CM7 C34 C34 C 0 1 N N N N N N 28.555 6.954 35.021 28.555 6.954 35.021 C34 CM7 34
CM7 C35 C35 C 0 1 Y N N N N N 29.634 7.507 34.057 29.634 7.507 34.057 C35 CM7 35
CM7 C36 C36 C 0 1 Y N N N N N 31.042 7.493 34.438 31.042 7.493 34.438 C36 CM7 36
CM7 C37 C37 C 0 1 Y N N N N N 32.043 8.017 33.525 32.043 8.017 33.525 C37 CM7 37
CM7 C38 C38 C 0 1 Y N N N N N 31.645 8.572 32.239 31.645 8.572 32.239 C38 CM7 38
CM7 C39 C39 C 0 1 Y N N N N N 30.248 8.569 31.865 30.248 8.569 31.865 C39 CM7 39
CM7 C40 C40 C 0 1 Y N N N N N 29.239 8.048 32.767 29.239 8.048 32.767 C40 CM7 40
CM7 C41 C41 C 0 1 N N N N N N 29.793 9.130 30.518 29.793 9.130 30.518 C41 CM7 41
CM7 F42 F42 F 0 1 N N N N N N 28.777 10.005 30.668 28.777 10.005 30.668 F42 CM7 42
CM7 F43 F43 F 0 1 N N N N N N 29.342 8.114 29.759 29.342 8.114 29.759 F43 CM7 43
CM7 F44 F44 F 0 1 N N N N N N 30.814 9.748 29.891 30.814 9.748 29.891 F44 CM7 44
CM7 H011 1H01 H 0 0 N N N N N N 27.631 -3.620 35.043 27.631 -3.620 35.043 H011 CM7 45
CM7 H012 2H01 H 0 0 N N N N N N 27.922 -2.751 33.499 27.923 -2.751 33.499 H012 CM7 46
CM7 H013 3H01 H 0 0 N N N N N N 27.470 -4.490 33.480 27.470 -4.490 33.480 H013 CM7 47
CM7 H021 1H02 H 0 0 N N N N N N 29.602 -5.196 34.143 29.602 -5.196 34.143 H021 CM7 48
CM7 H022 2H02 H 0 0 N N N N N N 30.021 -3.729 33.180 30.021 -3.729 33.180 H022 CM7 49
CM7 H04 H04 H 0 1 N N N N N N 30.716 -5.266 36.625 30.716 -5.266 36.625 H04 CM7 50
CM7 H061 1H06 H 0 0 N N N N N N 31.308 -4.696 38.801 31.308 -4.696 38.801 H061 CM7 51
CM7 H062 2H06 H 0 0 N N N N N N 32.896 -3.723 38.311 32.896 -3.723 38.311 H062 CM7 52
CM7 H071 1H07 H 0 0 N N N N N N 31.138 -3.495 40.622 31.138 -3.495 40.622 H071 CM7 53
CM7 H072 2H07 H 0 0 N N N N N N 32.889 -3.090 40.348 32.889 -3.090 40.348 H072 CM7 54
CM7 H121 1H12 H 0 0 N N N N N N 33.820 0.076 37.543 33.820 0.076 37.543 H121 CM7 55
CM7 H122 2H12 H 0 0 N N N N N N 33.546 0.934 39.097 33.546 0.934 39.097 H122 CM7 56
CM7 H123 3H12 H 0 0 N N N N N N 34.077 -0.782 39.099 34.077 -0.782 39.099 H123 CM7 57
CM7 H14 H14 H 0 1 N N N N N N 31.390 1.611 36.782 31.390 1.611 36.782 H14 CM7 58
CM7 H16 H16 H 0 1 N N N N N N 29.616 -0.999 33.720 29.616 -0.999 33.720 H16 CM7 59
CM7 H21 H21 H 0 1 N N N N N N 28.356 1.050 33.856 28.356 1.050 33.856 H21 CM7 60
CM7 H22 H22 H 0 1 N N N N N N 29.821 3.075 32.149 29.821 3.075 32.149 H22 CM7 61
CM7 H231 1H23 H 0 0 N N N N N N 27.156 1.579 31.753 27.156 1.579 31.753 H231 CM7 62
CM7 H232 2H23 H 0 0 N N N N N N 28.199 2.378 30.497 28.199 2.378 30.497 H232 CM7 63
CM7 H30 H30 H 0 1 N N N N N N 27.096 3.312 33.527 27.096 3.312 33.527 H30 CM7 64
CM7 H25 H25 H 0 1 N N N N N N 30.962 1.277 31.115 30.962 1.277 31.115 H25 CM7 65
CM7 H29 H29 H 0 1 N N N N N N 27.014 -0.688 31.131 27.014 -0.688 31.132 H29 CM7 66
CM7 H26 H26 H 0 1 N N N N N N 32.067 -0.959 30.683 32.067 -0.959 30.683 H26 CM7 67
CM7 H27 H27 H 0 1 N N N N N N 30.629 -3.045 30.476 30.629 -3.045 30.476 H27 CM7 68
CM7 H28 H28 H 0 1 N N N N N N 28.124 -2.931 30.718 28.124 -2.931 30.718 H28 CM7 69
CM7 H31 H31 H 0 1 N N N N N N 27.569 5.506 32.226 27.569 5.506 32.226 H31 CM7 70
CM7 H321 1H32 H 0 0 N N N N N N 28.997 4.072 34.970 28.997 4.073 34.970 H321 CM7 71
CM7 H322 2H32 H 0 0 N N N N N N 29.669 5.042 33.635 29.669 5.043 33.635 H322 CM7 72
CM7 H33 H33 H 0 1 N N N N N N 27.352 6.090 33.625 27.352 6.090 33.625 H33 CM7 73
CM7 H341 1H34 H 0 0 N N N N N N 27.826 7.752 35.225 27.826 7.752 35.225 H341 CM7 74
CM7 H342 2H34 H 0 0 N N N N N N 29.061 6.620 35.939 29.061 6.620 35.939 H342 CM7 75
CM7 H36 H36 H 0 1 N N N N N N 31.340 7.094 35.397 31.340 7.094 35.396 H36 CM7 76
CM7 H40 H40 H 0 1 N N N N N N 28.198 8.062 32.481 28.198 8.062 32.481 H40 CM7 77
CM7 H37 H37 H 0 1 N N N N N N 33.087 7.995 33.801 33.087 7.995 33.801 H37 CM7 78
CM7 H38 H38 H 0 1 N N N N N N 32.387 8.982 31.570 32.387 8.983 31.570 H38 CM7 79
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
CM7 C01 C02 SING N N 1
CM7 C02 C03 SING N N 2
CM7 C03 C04 DOUB Y N 3
CM7 C03 C17 SING Y N 4
CM7 C04 N05 SING Y N 5
CM7 N05 C06 SING N N 6
CM7 N05 C18 SING Y N 7
CM7 C06 C07 SING N N 8
CM7 C07 S08 SING N N 9
CM7 S08 O09 DOUB N N 10
CM7 S08 O10 DOUB N N 11
CM7 S08 N11 SING N N 12
CM7 N11 C12 SING N N 13
CM7 N11 C13 SING N N 14
CM7 C13 C14 SING Y N 15
CM7 C13 C18 DOUB Y N 16
CM7 C14 C15 DOUB Y N 17
CM7 C15 C16 SING Y N 18
CM7 C15 C19 SING N N 19
CM7 C16 C17 DOUB Y N 20
CM7 C17 C18 SING Y N 21
CM7 C19 O20 DOUB N N 22
CM7 C19 N21 SING N N 23
CM7 N21 C22 SING N N 24
CM7 C22 C23 SING N N 25
CM7 C22 C30 SING N N 26
CM7 C23 C24 SING N N 27
CM7 C24 C25 SING Y N 28
CM7 C24 C29 DOUB Y N 29
CM7 C25 C26 DOUB Y N 30
CM7 C26 C27 SING Y N 31
CM7 C27 C28 DOUB Y N 32
CM7 C28 C29 SING Y N 33
CM7 C30 O31 SING N N 34
CM7 C30 C32 SING N N 35
CM7 C32 N33 SING N N 36
CM7 N33 C34 SING N N 37
CM7 C34 C35 SING N N 38
CM7 C35 C36 SING Y N 39
CM7 C35 C40 DOUB Y N 40
CM7 C36 C37 DOUB Y N 41
CM7 C37 C38 SING Y N 42
CM7 C38 C39 DOUB Y N 43
CM7 C39 C40 SING Y N 44
CM7 C39 C41 SING N N 45
CM7 C41 F42 SING N N 46
CM7 C41 F43 SING N N 47
CM7 C41 F44 SING N N 48
CM7 C01 H011 SING N N 49
CM7 C01 H012 SING N N 50
CM7 C01 H013 SING N N 51
CM7 C02 H021 SING N N 52
CM7 C02 H022 SING N N 53
CM7 C04 H04 SING N N 54
CM7 C06 H061 SING N N 55
CM7 C06 H062 SING N N 56
CM7 C07 H071 SING N N 57
CM7 C07 H072 SING N N 58
CM7 C12 H121 SING N N 59
CM7 C12 H122 SING N N 60
CM7 C12 H123 SING N N 61
CM7 C14 H14 SING N N 62
CM7 C16 H16 SING N N 63
CM7 N21 H21 SING N N 64
CM7 C22 H22 SING N N 65
CM7 C23 H231 SING N N 66
CM7 C23 H232 SING N N 67
CM7 C30 H30 SING N N 68
CM7 C25 H25 SING N N 69
CM7 C29 H29 SING N N 70
CM7 C26 H26 SING N N 71
CM7 C27 H27 SING N N 72
CM7 C28 H28 SING N N 73
CM7 O31 H31 SING N N 74
CM7 C32 H321 SING N N 75
CM7 C32 H322 SING N N 76
CM7 N33 H33 SING N N 77
CM7 C34 H341 SING N N 78
CM7 C34 H342 SING N N 79
CM7 C36 H36 SING N N 80
CM7 C40 H40 SING N N 81
CM7 C37 H37 SING N N 82
CM7 C38 H38 SING N N 83
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
CM7 SMILES ACDLabs 10.04 FC(F)(F)c1cccc(c1)CNCC(O)C(NC(=O)c3cc4c2n(cc(c2c3)CC)CCS(=O)(=O)N4C)Cc5ccccc5
CM7 SMILES_CANONICAL CACTVS 3.341 CCc1cn2CC[S](=O)(=O)N(C)c3cc(cc1c23)C(=O)N[C@@H](Cc4ccccc4)[C@H](O)CNCc5cccc(c5)C(F)(F)F
CM7 SMILES CACTVS 3.341 CCc1cn2CC[S](=O)(=O)N(C)c3cc(cc1c23)C(=O)N[CH](Cc4ccccc4)[CH](O)CNCc5cccc(c5)C(F)(F)F
CM7 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCc1cn2c3c1cc(cc3[N@@](S(=O)(=O)CC2)C)C(=O)N[C@@H](Cc4ccccc4)[C@@H](CNCc5cccc(c5)C(F)(F)F)O
CM7 SMILES "OpenEye OEToolkits" 1.5.0 CCc1cn2c3c1cc(cc3N(S(=O)(=O)CC2)C)C(=O)NC(Cc4ccccc4)C(CNCc5cccc(c5)C(F)(F)F)O
CM7 InChI InChI 1.03 InChI=1S/C32H35F3N4O4S/c1-3-23-20-39-12-13-44(42,43)38(2)28-17-24(16-26(23)30(28)39)31(41)37-27(15-21-8-5-4-6-9-21)29(40)19-36-18-22-10-7-11-25(14-22)32(33,34)35/h4-11,14,16-17,20,27,29,36,40H,3,12-13,15,18-19H2,1-2H3,(H,37,41)/t27-,29+/m0/s1
CM7 InChIKey InChI 1.03 MSHYGGHZTGSTOG-LMSSTIIKSA-N
#
_pdbx_chem_comp_identifier.comp_id CM7
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program ACDLabs
_pdbx_chem_comp_identifier.program_version 10.04
_pdbx_chem_comp_identifier.identifier
"N-[(1S,2R)-1-benzyl-2-hydroxy-3-{[3-(trifluoromethyl)benzyl]amino}propyl]-7-ethyl-1-methyl-3,4-dihydro-1H-[1,2,5]thiadiazepino[3,4,5-hi]indole-9-carboxamide 2,2-dioxide"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
CM7 'Create component' 2008-02-05 EBI
CM7 'Modify aromatic_flag' 2011-06-04 RCSB
CM7 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
CM7 C01 C 3.000 1.982 1
CM7 C02 C 4.497 2.075 2
CM7 C03 C 5.165 3.418 3
CM7 C04 C 4.452 4.718 4
CM7 N05 N 5.422 5.840 5
CM7 C06 C 5.088 7.303 6
CM7 C07 C 6.024 8.475 7
CM7 S08 S 7.524 8.475 8
CM7 O09 O 7.524 9.975 9
CM7 O10 O 8.696 9.411 10
CM7 N11 N 8.459 7.303 11
CM7 C12 C 9.921 7.636 12
CM7 C13 C 8.125 5.840 13
CM7 C14 C 9.429 4.980 14
CM7 C15 C 9.325 3.421 15
CM7 C16 C 7.917 2.743 16
CM7 C17 C 6.633 3.633 17
CM7 C18 C 6.774 5.189 18
CM7 C19 C 10.567 2.581 19
CM7 O20 O 11.916 3.237 20
CM7 N21 N 10.461 1.085 21
CM7 C22 C 11.704 0.244 22
CM7 C23 C 13.053 0.901 23
CM7 C24 C 14.295 0.060 24
CM7 C25 C 14.189 -1.436 25
CM7 C26 C 15.431 -2.276 26
CM7 C27 C 16.780 -1.620 27
CM7 C28 C 16.887 -0.124 28
CM7 C29 C 15.644 0.716 29
CM7 C30 C 11.597 -1.252 30
CM7 O31 O 12.840 -2.092 31
CM7 C32 C 10.248 -1.908 32
CM7 N33 N 10.142 -3.404 33
CM7 C34 C 8.793 -4.060 34
CM7 C35 C 8.687 -5.556 35
CM7 C36 C 7.338 -6.212 36
CM7 C37 C 7.231 -7.708 37
CM7 C38 C 8.474 -8.549 38
CM7 C39 C 9.823 -7.893 39
CM7 C40 C 9.929 -6.396 40
CM7 C41 C 11.066 -8.733 41
CM7 F42 F 12.308 -9.573 42
CM7 F43 F 10.226 -9.975 43
CM7 F44 F 11.906 -7.490 44
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
CM7 C01 C02 SINGLE NONE 1
CM7 C02 C03 SINGLE NONE 2
CM7 C03 C04 DOUBLE NONE 3
CM7 C03 C17 SINGLE NONE 4
CM7 C04 N05 SINGLE NONE 5
CM7 N05 C06 SINGLE NONE 6
CM7 N05 C18 SINGLE NONE 7
CM7 C06 C07 SINGLE NONE 8
CM7 C07 S08 SINGLE NONE 9
CM7 S08 O09 DOUBLE NONE 10
CM7 S08 O10 DOUBLE NONE 11
CM7 S08 N11 SINGLE NONE 12
CM7 N11 C12 SINGLE NONE 13
CM7 N11 C13 SINGLE NONE 14
CM7 C13 C14 SINGLE NONE 15
CM7 C13 C18 DOUBLE NONE 16
CM7 C14 C15 DOUBLE NONE 17
CM7 C15 C16 SINGLE NONE 18
CM7 C15 C19 SINGLE NONE 19
CM7 C16 C17 DOUBLE NONE 20
CM7 C17 C18 SINGLE NONE 21
CM7 C19 O20 DOUBLE NONE 22
CM7 C19 N21 SINGLE NONE 23
CM7 N21 C22 SINGLE NONE 24
CM7 C22 C23 SINGLE BEGINWEDGE 25
CM7 C22 C30 SINGLE NONE 26
CM7 C23 C24 SINGLE NONE 27
CM7 C24 C25 DOUBLE NONE 28
CM7 C24 C29 SINGLE NONE 29
CM7 C25 C26 SINGLE NONE 30
CM7 C26 C27 DOUBLE NONE 31
CM7 C27 C28 SINGLE NONE 32
CM7 C28 C29 DOUBLE NONE 33
CM7 C30 O31 SINGLE BEGINDASH 34
CM7 C30 C32 SINGLE NONE 35
CM7 C32 N33 SINGLE NONE 36
CM7 N33 C34 SINGLE NONE 37
CM7 C34 C35 SINGLE NONE 38
CM7 C35 C36 DOUBLE NONE 39
CM7 C35 C40 SINGLE NONE 40
CM7 C36 C37 SINGLE NONE 41
CM7 C37 C38 DOUBLE NONE 42
CM7 C38 C39 SINGLE NONE 43
CM7 C39 C40 DOUBLE NONE 44
CM7 C39 C41 SINGLE NONE 45
CM7 C41 F42 SINGLE NONE 46
CM7 C41 F43 SINGLE NONE 47
CM7 C41 F44 SINGLE NONE 48
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
CM7 MurckoScaffold S1 scaffold 'O=C(N[C@H](CCNCc1ccccc1)Cc1ccccc1)c1cc2c3c(ccn3CCS(=O)(=O)N2)c1' InChI=1S/C28H30N4O3S/c33-28(24-18-23-12-14-32-15-16-36(34,35)31-26(19-24)27(23)32)30-25(17-21-7-3-1-4-8-21)11-13-29-20-22-9-5-2-6-10-22/h1-10,12,14,18-19,25,29,31H,11,13,15-17,20H2,(H,30,33)/t25-/m1/s1 LJQUEVDPQTWRMQ-RUZDIDTESA-N
CM7 amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
CM7 indole F2 fragment 'c1ccc2[nH]ccc2c1' InChI=1S/C8H7N/c1-2-4-8-7(3-1)5-6-9-8/h1-6,9H SIKJAQJRHWYJAI-UHFFFAOYSA-N
CM7 phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
CM7 pyrrole F4 fragment 'c1cc[nH]c1' InChI=1S/C4H5N/c1-2-4-5-3-1/h1-5H KAESVJOAVNADME-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
CM7 C03 S1 1
CM7 C04 S1 1
CM7 N05 S1 1
CM7 C06 S1 1
CM7 C07 S1 1
CM7 S08 S1 1
CM7 O09 S1 1
CM7 O10 S1 1
CM7 N11 S1 1
CM7 C13 S1 1
CM7 C14 S1 1
CM7 C15 S1 1
CM7 C16 S1 1
CM7 C17 S1 1
CM7 C18 S1 1
CM7 C19 S1 1
CM7 O20 S1 1
CM7 N21 S1 1
CM7 C22 S1 1
CM7 C23 S1 1
CM7 C24 S1 1
CM7 C25 S1 1
CM7 C26 S1 1
CM7 C27 S1 1
CM7 C28 S1 1
CM7 C29 S1 1
CM7 C30 S1 1
CM7 C32 S1 1
CM7 N33 S1 1
CM7 C34 S1 1
CM7 C35 S1 1
CM7 C36 S1 1
CM7 C37 S1 1
CM7 C38 S1 1
CM7 C39 S1 1
CM7 C40 S1 1
CM7 N21 F1 1
CM7 C19 F1 1
CM7 O20 F1 1
CM7 C15 F1 1
CM7 C18 F2 1
CM7 C17 F2 1
CM7 C03 F2 1
CM7 C04 F2 1
CM7 N05 F2 1
CM7 C16 F2 1
CM7 C15 F2 1
CM7 C14 F2 1
CM7 C13 F2 1
CM7 C13 F3 1
CM7 C14 F3 1
CM7 C15 F3 1
CM7 C16 F3 1
CM7 C17 F3 1
CM7 C18 F3 1
CM7 C24 F3 2
CM7 C25 F3 2
CM7 C26 F3 2
CM7 C27 F3 2
CM7 C28 F3 2
CM7 C29 F3 2
CM7 C35 F3 3
CM7 C36 F3 3
CM7 C37 F3 3
CM7 C38 F3 3
CM7 C39 F3 3
CM7 C40 F3 3
CM7 C04 F4 1
CM7 C03 F4 1
CM7 C17 F4 1
CM7 C18 F4 1
CM7 N05 F4 1
#
_pdbe_chem_comp_rdkit_properties.comp_id CM7
_pdbe_chem_comp_rdkit_properties.exactmw 628.233
_pdbe_chem_comp_rdkit_properties.amw 628.717
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 8
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 3
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 44
_pdbe_chem_comp_rdkit_properties.NumAtoms 79
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 12
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.344
_pdbe_chem_comp_rdkit_properties.NumRings 5
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 303.469
_pdbe_chem_comp_rdkit_properties.tpsa 103.670
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.411
_pdbe_chem_comp_rdkit_properties.CrippenMR 159.703
_pdbe_chem_comp_rdkit_properties.chi0v 21.780
_pdbe_chem_comp_rdkit_properties.chi1v 12.648
_pdbe_chem_comp_rdkit_properties.chi2v 6.138
_pdbe_chem_comp_rdkit_properties.chi3v 6.138
_pdbe_chem_comp_rdkit_properties.chi4v 3.954
_pdbe_chem_comp_rdkit_properties.chi0n 55.964
_pdbe_chem_comp_rdkit_properties.chi1n 28.510
_pdbe_chem_comp_rdkit_properties.chi2n 5.126
_pdbe_chem_comp_rdkit_properties.chi3n 5.126
_pdbe_chem_comp_rdkit_properties.chi4n 3.284
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.870
_pdbe_chem_comp_rdkit_properties.kappa1 9.813
_pdbe_chem_comp_rdkit_properties.kappa2 12.624
_pdbe_chem_comp_rdkit_properties.kappa3 6.768
_pdbe_chem_comp_rdkit_properties.Phi 2.816
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
CM7 UniChem ZINC ZINC000016052623
CM7 UniChem SureChEMBL SCHEMBL5930482
CM7 UniChem 'PubChem TPHARMA' 85845814
CM7 UniChem BindingDb 26503
CM7 UniChem PubChem 11296859
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
CM7 C01 5.787 4.144 -2.599 ETKDGv3 1
CM7 C02 5.558 4.393 -1.113 ETKDGv3 2
CM7 C03 5.560 3.100 -0.352 ETKDGv3 3
CM7 C04 6.619 2.561 0.254 ETKDGv3 4
CM7 N05 6.358 1.259 0.810 ETKDGv3 5
CM7 C06 7.418 0.246 0.759 ETKDGv3 6
CM7 C07 7.344 -0.737 1.918 ETKDGv3 7
CM7 S08 5.961 -1.827 1.721 ETKDGv3 8
CM7 O09 5.956 -2.450 0.353 ETKDGv3 9
CM7 O10 6.044 -2.917 2.753 ETKDGv3 10
CM7 N11 4.521 -0.898 1.947 ETKDGv3 11
CM7 C12 3.599 -1.283 3.015 ETKDGv3 12
CM7 C13 4.131 0.079 0.967 ETKDGv3 13
CM7 C14 2.709 0.140 0.511 ETKDGv3 14
CM7 C15 2.255 1.164 -0.253 ETKDGv3 15
CM7 C16 3.192 2.256 -0.633 ETKDGv3 16
CM7 C17 4.464 2.154 -0.247 ETKDGv3 17
CM7 C18 4.972 1.030 0.507 ETKDGv3 18
CM7 C19 0.852 1.210 -0.730 ETKDGv3 19
CM7 O20 0.574 1.895 -1.751 ETKDGv3 20
CM7 N21 -0.191 0.496 -0.045 ETKDGv3 21
CM7 C22 -1.516 0.275 -0.642 ETKDGv3 22
CM7 C23 -1.431 -0.777 -1.781 ETKDGv3 23
CM7 C24 -0.855 -2.110 -1.359 ETKDGv3 24
CM7 C25 0.476 -2.284 -1.256 ETKDGv3 25
CM7 C26 1.030 -3.583 -0.822 ETKDGv3 26
CM7 C27 0.211 -4.605 -0.552 ETKDGv3 27
CM7 C28 -1.249 -4.438 -0.698 ETKDGv3 28
CM7 C29 -1.755 -3.260 -1.085 ETKDGv3 29
CM7 C30 -2.569 -0.026 0.468 ETKDGv3 30
CM7 O31 -2.390 -1.302 1.029 ETKDGv3 31
CM7 C32 -4.026 0.144 -0.006 ETKDGv3 32
CM7 N33 -4.477 -1.014 -0.793 ETKDGv3 33
CM7 C34 -5.697 -0.721 -1.560 ETKDGv3 34
CM7 C35 -6.894 -0.511 -0.664 ETKDGv3 35
CM7 C36 -7.542 -1.561 -0.132 ETKDGv3 36
CM7 C37 -8.695 -1.346 0.763 ETKDGv3 37
CM7 C38 -9.089 -0.104 1.068 ETKDGv3 38
CM7 C39 -8.363 1.070 0.517 ETKDGv3 39
CM7 C40 -7.334 0.865 -0.326 ETKDGv3 40
CM7 C41 -8.829 2.470 0.825 ETKDGv3 41
CM7 F42 -9.590 2.940 -0.229 ETKDGv3 42
CM7 F43 -7.743 3.309 1.008 ETKDGv3 43
CM7 F44 -9.595 2.493 1.977 ETKDGv3 44
CM7 H011 4.980 3.501 -3.012 ETKDGv3 45
CM7 H012 6.768 3.647 -2.759 ETKDGv3 46
CM7 H013 5.785 5.111 -3.144 ETKDGv3 47
CM7 H021 6.356 5.063 -0.725 ETKDGv3 48
CM7 H022 4.584 4.907 -0.970 ETKDGv3 49
CM7 H04 7.600 3.020 0.257 ETKDGv3 50
CM7 H061 7.384 -0.285 -0.216 ETKDGv3 51
CM7 H062 8.409 0.749 0.821 ETKDGv3 52
CM7 H071 8.272 -1.347 1.943 ETKDGv3 53
CM7 H072 7.253 -0.190 2.881 ETKDGv3 54
CM7 H121 3.027 -2.184 2.708 ETKDGv3 55
CM7 H122 4.164 -1.504 3.945 ETKDGv3 56
CM7 H123 2.892 -0.456 3.241 ETKDGv3 57
CM7 H14 2.054 -0.677 0.781 ETKDGv3 58
CM7 H16 2.847 3.127 -1.175 ETKDGv3 59
CM7 H21 -0.019 0.190 0.938 ETKDGv3 60
CM7 H22 -1.831 1.233 -1.113 ETKDGv3 61
CM7 H231 -0.799 -0.363 -2.597 ETKDGv3 62
CM7 H232 -2.427 -0.923 -2.243 ETKDGv3 63
CM7 H30 -2.429 0.745 1.264 ETKDGv3 64
CM7 H25 1.160 -1.481 -1.494 ETKDGv3 65
CM7 H29 -2.825 -3.155 -1.202 ETKDGv3 66
CM7 H26 2.101 -3.703 -0.722 ETKDGv3 67
CM7 H27 0.615 -5.557 -0.234 ETKDGv3 68
CM7 H28 -1.908 -5.272 -0.496 ETKDGv3 69
CM7 H31 -1.683 -1.228 1.721 ETKDGv3 70
CM7 H321 -4.111 1.084 -0.596 ETKDGv3 71
CM7 H322 -4.677 0.256 0.890 ETKDGv3 72
CM7 H33 -4.668 -1.813 -0.144 ETKDGv3 73
CM7 H341 -5.537 0.165 -2.214 ETKDGv3 74
CM7 H342 -5.897 -1.573 -2.246 ETKDGv3 75
CM7 H36 -7.228 -2.574 -0.353 ETKDGv3 76
CM7 H40 -6.813 1.708 -0.765 ETKDGv3 77
CM7 H37 -9.223 -2.198 1.171 ETKDGv3 78
CM7 H38 -9.942 0.034 1.720 ETKDGv3 79
#