Services
Research
Training
Industry
About us
Protein Data Bank
in Europe
Bringing Structure to Biology
Chemical Components in the PDB
pdbe.org/chem
Feedback
Share
Summary
Atoms
Bonds
In PDB Entries
Names
Descriptors
Complete Listing
Modify Search
Download Links
Molfile:
Ideal
Representative
PDB:
Ideal
Representative
Other:
mmCif
CML
Related compounds
Could not find any related compound in the PDB.
3D-Views
Ideal
Representative
PDB Links
PDB entries
PDBeChem : Chemical Bonds
Molecule :
C6H
Bonds between two atoms of the molecule
Total Number of Bonds: 65
50
10 per page
20 per page
Show all
Record
First Atom
Second Atom
First Element
Second Element
Bond Order Type
Bond Length
Bond Stereochemistry
Is Aromatic
1
CL
C23
CL
C
sing
1.74
N
N
2
C22
C23
C
C
doub
1.36
N
Y
3
C22
C04
C
C
sing
1.41
N
Y
4
O06
C05
O
C
doub
1.21
N
N
5
C23
C25
C
C
sing
1.4
N
Y
6
C05
C04
C
C
sing
1.47
N
N
7
C05
C07
C
C
sing
1.51
N
N
8
C08
C07
C
C
sing
1.53
N
N
9
C08
C09
C
C
sing
1.53
N
N
10
C04
C03
C
C
doub
1.4
N
Y
11
C25
N26
C
N
sing
1.37
N
Y
12
C25
C29
C
C
doub
1.41
N
Y
13
C21
C09
C
C
sing
1.53
N
N
14
C21
C20
C
C
sing
1.53
N
N
15
N26
C27
N
C
sing
1.37
N
Y
16
C09
C10
C
C
sing
1.53
N
N
17
C03
C29
C
C
sing
1.4
N
Y
18
C03
O02
C
O
sing
1.36
N
N
19
C29
C28
C
C
sing
1.47
N
Y
20
C20
N12
C
N
sing
1.47
N
N
21
C27
C28
C
C
doub
1.34
N
Y
22
O02
C01
O
C
sing
1.43
N
N
23
C10
C11
C
C
sing
1.53
N
N
24
C18
C19
C
C
sing
1.53
N
N
25
C18
C17
C
C
sing
1.53
N
N
26
N12
C11
N
C
sing
1.47
N
N
27
N12
C13
N
C
sing
1.47
N
N
28
C19
C14
C
C
sing
1.53
N
N
29
C14
C13
C
C
sing
1.53
N
N
30
C14
C15
C
C
sing
1.53
N
N
31
C17
C16
C
C
sing
1.53
N
N
32
C16
C15
C
C
sing
1.53
N
N
33
C01
H1
C
H
sing
1.09
N
N
34
C01
H2
C
H
sing
1.09
N
N
35
C01
H3
C
H
sing
1.09
N
N
36
C07
H4
C
H
sing
1.09
N
N
37
C07
H5
C
H
sing
1.09
N
N
38
C08
H6
C
H
sing
1.09
N
N
39
C08
H7
C
H
sing
1.09
N
N
40
C09
H8
C
H
sing
1.09
N
N
41
C10
H9
C
H
sing
1.09
N
N
42
C10
H10
C
H
sing
1.09
N
N
43
C11
H11
C
H
sing
1.09
N
N
44
C11
H12
C
H
sing
1.09
N
N
45
C13
H14
C
H
sing
1.09
N
N
46
C13
H15
C
H
sing
1.09
N
N
47
C14
H16
C
H
sing
1.09
N
N
48
C15
H17
C
H
sing
1.09
N
N
49
C15
H18
C
H
sing
1.09
N
N
50
C16
H19
C
H
sing
1.09
N
N
51
C16
H20
C
H
sing
1.09
N
N
52
C17
H21
C
H
sing
1.09
N
N
53
C17
H22
C
H
sing
1.09
N
N
54
C18
H23
C
H
sing
1.09
N
N
55
C18
H24
C
H
sing
1.09
N
N
56
C19
H25
C
H
sing
1.09
N
N
57
C19
H26
C
H
sing
1.09
N
N
58
C20
H27
C
H
sing
1.09
N
N
59
C20
H28
C
H
sing
1.09
N
N
60
C21
H29
C
H
sing
1.09
N
N
61
C21
H30
C
H
sing
1.09
N
N
62
C22
H31
C
H
sing
1.08
N
N
63
N26
H32
N
H
sing
0.97
N
N
64
C27
H33
C
H
sing
1.08
N
N
65
C28
H34
C
H
sing
1.08
N
N