Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : B6G    

Bonds between two atoms of the molecule

Total Number of Bonds: 52


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C6 O C sing 1.43 N N
2 O3 C7 O C sing 1.43 N N
3 C6 C7 C C sing 1.55 N N
4 C6 C5 C C sing 1.54 N N
5 C7 C8 C C sing 1.55 N N
6 O6 P O P doub 1.48 N N
7 O1 C5 O C sing 1.43 N N
8 O1 P O P sing 1.61 N N
9 C5 O4 C O sing 1.43 N N
10 C8 O4 C O sing 1.44 N N
11 C8 N1 C N sing 1.47 N N
12 P O5 P O sing 1.61 N N
13 P O P O sing 1.61 N N
14 N2 C9 N C doub 1.33 N Y
15 N2 C10 N C sing 1.32 N Y
16 N1 C9 N C sing 1.37 N Y
17 N1 C13 N C sing 1.36 N Y
18 O C4 O C sing 1.34 N N
19 C9 C12 C C sing 1.41 N Y
20 C10 N3 C N doub 1.32 N Y
21 C13 N5 C N doub 1.3 N Y
22 C4 O7 C O doub 1.21 N N
23 C4 C3 C C sing 1.51 N N
24 C12 N5 C N sing 1.35 N Y
25 C12 C11 C C doub 1.41 N Y
26 N3 C11 N C sing 1.33 N Y
27 N C3 N C sing 1.47 N N
28 C11 N4 C N sing 1.38 N N
29 C3 C1 C C sing 1.53 N N
30 C1 C C C sing 1.53 N N
31 C1 C2 C C sing 1.53 N N
32 C8 H1 C H sing 1.09 N N
33 C5 H2 C H sing 1.09 N N
34 C6 H3 C H sing 1.09 N N
35 C2 H4 C H sing 1.09 N N
36 C2 H5 C H sing 1.09 N N
37 C2 H6 C H sing 1.09 N N
38 C3 H7 C H sing 1.09 N N
39 N H8 N H sing 1.01 N N
40 N H9 N H sing 1.01 N N
41 C1 H11 C H sing 1.09 N N
42 C H12 C H sing 1.09 N N
43 C H13 C H sing 1.09 N N
44 C H14 C H sing 1.09 N N
45 O5 H15 O H sing 0.97 N N
46 C7 H16 C H sing 1.09 N N
47 O3 H17 O H sing 0.97 N N
48 O2 H18 O H sing 0.97 N N
49 C13 H19 C H sing 1.08 N N
50 N4 H20 N H sing 0.97 N N
51 N4 H21 N H sing 0.97 N N
52 C10 H22 C H sing 1.08 N N