Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : B0W    

Bonds between two atoms of the molecule

Total Number of Bonds: 44


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3' C3' O C sing 1.43 N N
2 O4' C4' O C sing 1.43 N N
3 C3' C4' C C sing 1.53 N N
4 C3' C2' C C sing 1.53 N N
5 C4' C5' C C sing 1.53 N N
6 O2' C2' O C sing 1.43 N N
7 C2' C1' C C sing 1.53 N N
8 O6' C6' O C sing 1.43 N N
9 C5' C6' C C sing 1.53 N N
10 C5' O5' C O sing 1.43 N N
11 C1' O5' C O sing 1.43 N N
12 C1' C1 C C sing 1.51 N N
13 N2 C1 N C doub 1.31 N Y
14 N2 N3 N N sing 1.29 N Y
15 C1 N5 C N sing 1.35 N Y
16 N3 C4 N C doub 1.31 N Y
17 N5 C4 N C sing 1.37 N Y
18 C4 C6 C C sing 1.48 N N
19 C6 C7 C C doub 1.4 N Y
20 C6 C11 C C sing 1.4 N Y
21 C7 C8 C C sing 1.38 N Y
22 C11 C10 C C doub 1.38 N Y
23 C8 C9 C C doub 1.4 N Y
24 C10 C9 C C sing 1.4 N Y
25 C9 C12 C C sing 1.48 N N
26 C12 O13 C O doub 1.22 N N
27 C12 O14 C O sing 1.35 N N
28 C11 H1 C H sing 1.08 N N
29 C10 H2 C H sing 1.08 N N
30 O14 H3 O H sing 0.97 N N
31 C8 H4 C H sing 1.08 N N
32 C7 H5 C H sing 1.08 N N
33 N5 H6 N H sing 0.97 N N
34 C1' H7 C H sing 1.09 N N
35 C5' H8 C H sing 1.09 N N
36 C6' H9 C H sing 1.09 N N
37 C6' H10 C H sing 1.09 N N
38 O6' H11 O H sing 0.97 N N
39 C4' H12 C H sing 1.09 N N
40 O4' H13 O H sing 0.97 N N
41 C3' H14 C H sing 1.09 N N
42 O3' H15 O H sing 0.97 N N
43 C2' H16 C H sing 1.09 N N
44 O2' H17 O H sing 0.97 N N