Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : B0W

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C11 C C1 N Y N 0 -3.269 0.164 1.022
2 C10 C C2 N Y N 0 -4.623 0.249 1.252
3 C9 C C3 N Y N 0 -5.522 0.108 0.191
4 C12 C C4 N N N 0 -6.974 0.199 0.438
5 O13 O O1 N N N 0 -7.389 0.395 1.563
6 O14 O O2 N N N 0 -7.841 0.063 -0.585
7 C8 C C5 N Y N 0 -5.045 -0.118 -1.103
8 C7 C C6 N Y N 0 -3.691 -0.202 -1.332
9 C6 C C7 N Y N 0 -2.793 -0.056 -0.273
10 C4 C C8 N Y N 0 -1.338 -0.146 -0.52
11 N5 N N1 N Y N 0 -0.344 -0.024 0.414
12 N3 N N2 N Y N 0 -0.753 -0.363 -1.677
13 N2 N N3 N Y N 0 0.523 -0.377 -1.518
14 C1 C C9 N Y N 0 0.82 -0.175 -0.262
15 C1' C C10 S N N 0 2.205 -0.12 0.329
16 O5' O O3 N N N 0 2.906 1.006 -0.203
17 C5' C C11 R N N 0 4.229 1.167 0.312
18 C6' C C12 N N N 0 4.868 2.414 -0.303
19 O6' O O4 N N N 0 4.152 3.575 0.122
20 C4' C C13 S N N 0 5.066 -0.064 -0.042
21 O4' O O5 N N N 0 6.373 0.069 0.521
22 C3' C C14 R N N 0 4.388 -1.314 0.527
23 O3' O O6 N N N 0 5.124 -2.476 0.139
24 C2' C C15 R N N 0 2.962 -1.403 -0.025
25 O2' O O7 N N N 0 2.295 -2.526 0.555
26 H1 H H1 N N N 0 -2.574 0.273 1.842
27 H2 H H2 N N N 0 -4.991 0.423 2.253
28 H3 H H3 N N N 0 -8.783 0.13 -0.374
29 H4 H H4 N N N 0 -5.74 -0.227 -1.923
30 H5 H H5 N N N 0 -3.323 -0.376 -2.332
31 H6 H H6 N N N 0 -0.451 0.138 1.364
32 H7 H H7 N N N 0 2.135 -0.026 1.412
33 H8 H H8 N N N 0 4.185 1.278 1.396
34 H9 H H9 N N N 0 5.906 2.487 0.021
35 H10 H H10 N N N 0 4.831 2.342 -1.39
36 H11 H H11 N N N 0 4.503 4.404 -0.231
37 H12 H H12 N N N 0 5.144 -0.153 -1.125
38 H13 H H13 N N N 0 6.959 -0.677 0.336
39 H14 H H14 N N N 0 4.355 -1.249 1.614
40 H15 H H15 N N N 0 4.75 -3.306 0.465
41 H16 H H16 N N N 0 2.997 -1.519 -1.108
42 H17 H H17 N N N 0 2.723 -3.374 0.375