Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : AXW    

Bonds between two atoms of the molecule

Total Number of Bonds: 55


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C07 C04 C C sing 1.51 N N
2 C04 C03 C C doub 1.38 N Y
3 C04 C05 C C sing 1.39 N Y
4 C03 C02 C C sing 1.39 N Y
5 C05 C06 C C doub 1.38 N Y
6 C02 N02 C N sing 1.39 N N
7 C02 N01 C N doub 1.32 N Y
8 C3' C2' C C sing 1.54 N N
9 C3' C08 C C sing 1.53 N N
10 C3' C4' C C sing 1.54 N N
11 C06 N01 C N sing 1.32 N Y
12 C06 C08 C C sing 1.51 N N
13 C2' N1' C N sing 1.49 N N
14 C10 O09 C O sing 1.43 N N
15 C10 C11 C C sing 1.53 N N
16 C4' O09 C O sing 1.43 N N
17 C4' C5' C C sing 1.54 N N
18 N1' C5' N C sing 1.49 N N
19 C11 N12 C N sing 1.47 N N
20 N12 C13 N C sing 1.47 N N
21 C26 C25 C C doub 1.38 N Y
22 C26 C21 C C sing 1.38 N Y
23 C25 C24 C C sing 1.38 N Y
24 C13 C21 C C sing 1.51 N N
25 C21 C22 C C doub 1.38 N Y
26 C24 C23 C C doub 1.38 N Y
27 C22 C23 C C sing 1.38 N Y
28 C22 F22 C F sing 1.35 N N
29 C23 H1 C H sing 1.08 N N
30 C24 H2 C H sing 1.08 N N
31 C25 H3 C H sing 1.08 N N
32 C26 H4 C H sing 1.08 N N
33 C13 H5 C H sing 1.09 N N
34 C13 H6 C H sing 1.09 N N
35 N12 H7 N H sing 1.01 N N
36 C11 H9 C H sing 1.09 N N
37 C11 H10 C H sing 1.09 N N
38 C10 H11 C H sing 1.09 N N
39 C10 H12 C H sing 1.09 N N
40 C4' H13 C H sing 1.09 N N
41 C5' H14 C H sing 1.09 N N
42 C5' H15 C H sing 1.09 N N
43 N1' H16 N H sing 1.01 N N
44 C2' H18 C H sing 1.09 N N
45 C2' H19 C H sing 1.09 N N
46 C3' H20 C H sing 1.09 N N
47 C08 H21 C H sing 1.09 N N
48 C08 H22 C H sing 1.09 N N
49 N02 H23 N H sing 0.97 N N
50 N02 H24 N H sing 0.97 N N
51 C03 H25 C H sing 1.08 N N
52 C05 H26 C H sing 1.08 N N
53 C07 H27 C H sing 1.09 N N
54 C07 H28 C H sing 1.09 N N
55 C07 H29 C H sing 1.09 N N