Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : AR6    

Bonds between two atoms of the molecule

Total Number of Bonds: 62


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C2 N C doub 1.32 N Y
2 N1 C6 N C sing 1.33 N Y
3 C2 N3 C N sing 1.32 N Y
4 N3 C4 N C doub 1.33 N Y
5 C4 C5 C C sing 1.4 N Y
6 C4 N9 C N sing 1.37 N Y
7 C5 C6 C C doub 1.41 N Y
8 C5 N7 C N sing 1.36 N Y
9 C6 N6 C N sing 1.38 N N
10 N7 C8 N C doub 1.3 N Y
11 C8 N9 C N sing 1.36 N Y
12 N9 C1' N C sing 1.46 N N
13 PA O1A P O sing 1.61 N N
14 PA O2A P O doub 1.48 N N
15 PA O3A P O sing 1.61 N N
16 PA O5' P O sing 1.61 N N
17 PB O1B P O sing 1.61 N N
18 PB O2B P O doub 1.48 N N
19 PB O3A P O sing 1.61 N N
20 PB O5D P O sing 1.61 N N
21 C1' C2' C C sing 1.55 N N
22 C1' O4' C O sing 1.44 N N
23 C1D O1D C O sing 1.43 N N
24 C1D C2D C C sing 1.54 N N
25 C1D O4D C O sing 1.44 N N
26 C2' O2' C O sing 1.43 N N
27 C2' C3' C C sing 1.55 N N
28 C2D O2D C O sing 1.43 N N
29 C2D C3D C C sing 1.55 N N
30 C3' O3' C O sing 1.43 N N
31 C3' C4' C C sing 1.54 N N
32 C3D O3D C O sing 1.43 N N
33 C3D C4D C C sing 1.55 N N
34 C4' O4' C O sing 1.44 N N
35 C4' C5' C C sing 1.53 N N
36 C4D O4D C O sing 1.44 N N
37 C4D C5D C C sing 1.53 N N
38 C5' O5' C O sing 1.43 N N
39 C5D O5D C O sing 1.43 N N
40 C2 H2 C H sing 1.08 N N
41 N6 HN6 N H sing 0.97 N N
42 N6 HN6A N H sing 0.97 N N
43 C8 H8 C H sing 1.08 N N
44 C1' H1' C H sing 1.09 N N
45 C1D H1D C H sing 1.09 N N
46 C2' H2' C H sing 1.09 N N
47 O2' HO2' O H sing 0.97 N N
48 C2D H2D C H sing 1.09 N N
49 O2D HO2D O H sing 0.97 N N
50 C3' H3' C H sing 1.09 N N
51 O3' HO3' O H sing 0.97 N N
52 C3D H3D C H sing 1.09 N N
53 O3D HO3D O H sing 0.97 N N
54 C4' H4' C H sing 1.09 N N
55 C4D H4D C H sing 1.09 N N
56 C5' H5' C H sing 1.09 N N
57 C5' H5'A C H sing 1.09 N N
58 C5D H5D C H sing 1.09 N N
59 C5D H5DA C H sing 1.09 N N
60 O1A H1A O H sing 0.97 N N
61 O1B H1B O H sing 0.97 N N
62 O1D HD1 O H sing 0.97 N N