Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : AR6

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 59


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 N1 N N1 N Y N 0 -8.232 3.116 0.345
2 C2 C C2 N Y N 0 -8.022 2.281 1.347
3 N3 N N3 N Y N 0 -7.005 1.445 1.368
4 C4 C C4 N Y N 0 -6.135 1.41 0.364
5 C5 C C5 N Y N 0 -6.315 2.279 -0.725
6 C6 C C6 N Y N 0 -7.415 3.153 -0.702
7 N9 N N9 N Y N 0 -5.006 0.683 0.086
8 N6 N N6 N N N 0 -7.643 4.031 -1.747
9 N7 N N7 N Y N 0 -5.304 2.042 -1.596
10 C8 C C8 N Y N 0 -4.535 1.105 -1.122
11 PA P PA N N N 0 0.814 -2.273 -0.782
12 PB P PB N N N 0 3.292 -0.786 -1.442
13 C1' C C1' R N N 0 -4.414 -0.357 0.931
14 O1A O O1A N N N 0 1.339 -3.723 -0.319
15 O1B O O1B N N N 0 2.859 0.174 -2.659
16 C1D C C1D S N N 0 7.806 0.743 1.993
17 O1D O O1D N N Y 0 7.282 1.453 3.117
18 C2' C C2' R N N 0 -5.091 -1.726 0.668
19 O2' O O2' N N N 0 -6.262 -1.878 1.472
20 O2A O O2A N N N 0 0.42 -2.322 -2.208
21 O2B O O2B N N N 0 3.926 -2.01 -1.98
22 C2D C C2D R N N 0 8.538 1.718 1.051
23 O2D O O2D N N N 0 8.509 3.044 1.583
24 C3' C C3' S N N 0 -3.989 -2.722 1.104
25 O3' O O3' N N N 0 -4.227 -3.18 2.437
26 O3A O O3A N N N 0 1.988 -1.189 -0.587
27 C3D C C3D S N N 0 7.732 1.646 -0.269
28 O3D O O3D N N N 0 7.582 2.945 -0.846
29 C4' C C4' R N N 0 -2.688 -1.898 1.041
30 O4' O O4' N N N 0 -3.036 -0.587 0.565
31 C4D C C4D R N N 0 6.367 1.093 0.213
32 O4D O O4D N N N 0 6.731 0.151 1.245
33 C5' C C5' N N N 0 -1.701 -2.557 0.076
34 O5' O O5' N N N 0 -0.458 -1.853 0.112
35 C5D C C5D N N N 0 5.638 0.385 -0.931
36 O5D O O5D N N N 0 4.337 -0.012 -0.493
37 H2 H H2 N N N 0 -8.71 2.284 2.179
38 HN6 H HN6 N N N 0 -8.407 4.629 -1.72
39 HN6A H HN6A N N N 0 -7.04 4.048 -2.507
40 H8 H H8 N N N 0 -3.654 0.72 -1.613
41 H1' H H1' N N N 0 -4.493 -0.085 1.984
42 H1D H H1D N N N 0 8.494 -0.032 2.333
43 H2' H H2' N N N 0 -5.329 -1.846 -0.389
44 HO2' H HO2' N N N 0 -6.722 -2.719 1.343
45 H2D H H2D N N N 0 9.566 1.394 0.891
46 HO2D H HO2D N N N 0 8.949 3.133 2.44
47 H3' H H3' N N N 0 -3.943 -3.565 0.414
48 HO3' H HO3' N N N 0 -5.062 -3.655 2.546
49 H3D H H3D N N N 0 8.203 0.962 -0.975
50 HO3D H HO3D N N N 0 8.418 3.37 -1.081
51 H4' H H4' N N N 0 -2.247 -1.826 2.035
52 H4D H H4D N N N 0 5.752 1.894 0.624
53 H5' H H5' N N N 0 -1.54 -3.593 0.372
54 H5'A H H5'A N N N 0 -2.107 -2.527 -0.936
55 H5D H H5D N N N 0 5.545 1.064 -1.778
56 H5DA H H5DA N N N 0 6.205 -0.496 -1.232
57 H1A H H1A N N N 0 1.615 -3.764 0.607
58 H1B H H1B N N N 0 2.435 0.998 -2.379
59 HD1 H HD1 N N N 0 6.809 0.896 3.749