Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : AGS    

Bonds between two atoms of the molecule

Total Number of Bonds: 49


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 PG S1G P S doub 1.86 N N
2 PG O2G P O sing 1.61 N N
3 PG O3G P O sing 1.61 N N
4 PG O3B P O sing 1.61 N N
5 PB O1B P O doub 1.48 N N
6 PB O2B P O sing 1.61 N N
7 PB O3B P O sing 1.61 N N
8 PB O3A P O sing 1.61 N N
9 PA O1A P O doub 1.48 N N
10 PA O2A P O sing 1.61 N N
11 PA O3A P O sing 1.61 N N
12 PA O5' P O sing 1.61 N N
13 O5' C5' O C sing 1.43 N N
14 C5' C4' C C sing 1.53 N N
15 C4' O4' C O sing 1.44 N N
16 C4' C3' C C sing 1.54 N N
17 O4' C1' O C sing 1.44 N N
18 C3' O3' C O sing 1.43 N N
19 C3' C2' C C sing 1.55 N N
20 C2' O2' C O sing 1.43 N N
21 C2' C1' C C sing 1.55 N N
22 C1' N9 C N sing 1.47 N N
23 N9 C8 N C sing 1.36 N Y
24 N9 C4 N C sing 1.37 N Y
25 C8 N7 C N doub 1.3 N Y
26 N7 C5 N C sing 1.35 N Y
27 C5 C6 C C sing 1.41 N Y
28 C5 C4 C C doub 1.4 N Y
29 C6 N6 C N sing 1.38 N N
30 C6 N1 C N doub 1.33 N Y
31 N1 C2 N C sing 1.32 N Y
32 C2 N3 C N doub 1.32 N Y
33 N3 C4 N C sing 1.33 N Y
34 O2G HOG2 O H sing 0.97 N N
35 O3G H21 O H sing 0.97 N N
36 O2B HOB2 O H sing 0.97 N N
37 O2A HOA2 O H sing 0.97 N N
38 C5' H5'1 C H sing 1.09 N N
39 C5' H5'2 C H sing 1.09 N N
40 C4' H4' C H sing 1.09 N N
41 C3' H3' C H sing 1.09 N N
42 O3' HO3' O H sing 0.97 N N
43 C2' H2' C H sing 1.09 N N
44 O2' HO2' O H sing 0.97 N N
45 C1' H1' C H sing 1.09 N N
46 C8 H8 C H sing 1.08 N N
47 N6 HN61 N H sing 0.97 N N
48 N6 HN62 N H sing 0.97 N N
49 C2 H2 C H sing 1.08 N N