Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : AGS

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 47


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PG P PG N N N 0 -5.637 -2.115 0.586
2 S1G S S1G N N N 0 -7.391 -1.534 0.347
3 O2G O O2G N N N 0 -5.542 -2.991 1.934
4 O3G O O3G N N N 0 -5.194 -3.016 -0.672
5 PB P PB N N N 0 -4.304 0.389 -0.272
6 O1B O O1B N N N 0 -4.199 -0.101 -1.664
7 O2B O O2B N N N 0 -5.464 1.501 -0.18
8 O3B O O3B N N N 0 -4.661 -0.841 0.705
9 PA P PA N N N 0 -1.862 2.05 -0.526
10 O1A O O1A N N N 0 -1.736 1.711 -1.961
11 O2A O O2A N N N 0 -2.4 3.561 -0.377
12 O3A O O3A N N N 0 -2.901 1.039 0.176
13 O5' O O5' N N N 0 -0.424 1.92 0.185
14 C5' C C5' N N N 0 0.738 2.612 -0.278
15 C4' C C4' R N N 0 1.928 2.266 0.62
16 O4' O O4' N N N 0 2.268 0.878 0.468
17 C3' C C3' S N N 0 3.16 3.089 0.196
18 O3' O O3' N N N 0 3.609 3.911 1.276
19 C2' C C2' R N N 0 4.227 2.023 -0.153
20 O2' O O2' N N N 0 5.514 2.411 0.331
21 C1' C C1' R N N 0 3.702 0.778 0.607
22 N9 N N9 N Y N 0 4.195 -0.453 -0.016
23 C8 C C8 N Y N 0 3.578 -1.161 -1.004
24 N7 N N7 N Y N 0 4.295 -2.2 -1.321
25 C5 C C5 N Y N 0 5.414 -2.225 -0.558
26 C6 C C6 N Y N 0 6.523 -3.083 -0.458
27 N6 N N6 N N N 0 6.627 -4.202 -1.266
28 N1 N N1 N Y N 0 7.469 -2.794 0.429
29 C2 C C2 N Y N 0 7.378 -1.728 1.204
30 N3 N N3 N Y N 0 6.358 -0.898 1.145
31 C4 C C4 N Y N 0 5.367 -1.102 0.284
32 HOG2 H HOG2 N N N 0 -6.105 -3.777 1.933
33 H21 H H21 N N N 0 -4.29 -3.354 -0.615
34 HOB2 H HOB2 N N N 0 -5.589 1.867 0.706
35 HOA2 H HOA2 N N N 0 -2.507 3.852 0.539
36 H5'1 H H5'1 N N N 0 0.956 2.311 -1.302
37 H5'2 H H5'2 N N N 0 0.558 3.687 -0.245
38 H4' H H4' N N N 0 1.681 2.476 1.661
39 H3' H H3' N N N 0 2.929 3.7 -0.677
40 HO3' H HO3' N N N 0 4.383 4.45 1.064
41 H2' H H2' N N N 0 4.257 1.839 -1.227
42 HO2' H HO2' N N N 0 5.845 3.235 -0.05
43 H1' H H1' N N N 0 3.99 0.82 1.657
44 H8 H H8 N N N 0 2.634 -0.898 -1.457
45 HN61 H HN61 N N N 0 5.93 -4.402 -1.91
46 HN62 H HN62 N N N 0 7.398 -4.786 -1.188
47 H2 H H2 N N N 0 8.169 -1.531 1.912