Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 9YH    

Bonds between two atoms of the molecule

Total Number of Bonds: 60


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OBA CAZ O C doub 1.21 N N
2 CAF CAE C C doub 1.38 N Y
3 CAF CAG C C sing 1.38 N Y
4 CAH CAG C C sing 1.51 N N
5 CAH N C N sing 1.47 N N
6 CAE CAQ C C sing 1.38 N Y
7 CAG CAS C C doub 1.39 N Y
8 CAZ OBD C O sing 1.34 N N
9 CAZ CAT C C sing 1.51 N N
10 CAJ N C N sing 1.47 N N
11 CAJ CAK C C sing 1.53 N N
12 N CA N C sing 1.47 N N
13 CAQ CAR C C doub 1.38 N Y
14 CAT NAL C N sing 1.47 N N
15 CAS CAR C C sing 1.39 N Y
16 CAS OAY C O sing 1.36 N N
17 CAK NAL C N sing 1.47 N N
18 CA C C C sing 1.51 N N
19 CAR OAX C O sing 1.36 N N
20 NAL CAM N C sing 1.47 N N
21 OAX CBC O C sing 1.43 N N
22 C O C O doub 1.21 N N
23 C OXT C O sing 1.34 N N
24 CAO CAP C C doub 1.38 N Y
25 CAO CAN C C sing 1.38 N Y
26 CAP CAW C C sing 1.38 N Y
27 CAM CAN C C sing 1.51 N N
28 CBE SBB C S sing 1.81 N N
29 CAN CAU C C doub 1.39 N Y
30 CAW CAV C C doub 1.38 N Y
31 CAU CAV C C sing 1.39 N Y
32 CAU SBB C S sing 1.76 N N
33 CBC H1 C H sing 1.09 N N
34 CBC H2 C H sing 1.09 N N
35 CBC H3 C H sing 1.09 N N
36 OAY H4 O H sing 0.97 N N
37 CAQ H5 C H sing 1.08 N N
38 CAE H6 C H sing 1.08 N N
39 CAF H7 C H sing 1.08 N N
40 CAH H8 C H sing 1.09 N N
41 CAH H9 C H sing 1.09 N N
42 CA H11 C H sing 1.09 N N
43 CA H12 C H sing 1.09 N N
44 OXT H13 O H sing 0.97 N N
45 CAJ H14 C H sing 1.09 N N
46 CAJ H15 C H sing 1.09 N N
47 CAK H16 C H sing 1.09 N N
48 CAK H17 C H sing 1.09 N N
49 CAT H19 C H sing 1.09 N N
50 CAT H20 C H sing 1.09 N N
51 OBD H21 O H sing 0.97 N N
52 CAM H22 C H sing 1.09 N N
53 CAM H23 C H sing 1.09 N N
54 CAO H24 C H sing 1.08 N N
55 CAP H25 C H sing 1.08 N N
56 CAW H26 C H sing 1.08 N N
57 CAV H27 C H sing 1.08 N N
58 CBE H28 C H sing 1.09 N N
59 CBE H29 C H sing 1.09 N N
60 CBE H30 C H sing 1.09 N N