Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 9PE    

Bonds between two atoms of the molecule

Total Number of Bonds: 99


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O12 P O P doub 1.48 N N
2 P O11 P O sing 1.61 N N
3 P O14 P O sing 1.61 N N
4 P O13 P O sing 1.61 N N
5 C12 N C N sing 1.47 N N
6 N HN N H sing 1.01 N N
7 N HNA N H sing 1.01 N N
8 O11 C1 O C sing 1.43 N N
9 O13 C11 O C sing 1.43 N N
10 O14 HO14 O H sing 0.97 N N
11 C11 C12 C C sing 1.53 N N
12 C11 H11 C H sing 1.09 N N
13 C11 H11A C H sing 1.09 N N
14 C12 H12 C H sing 1.09 N N
15 C12 H12A C H sing 1.09 N N
16 C2 C1 C C sing 1.53 N N
17 C1 H1 C H sing 1.09 N N
18 C1 H1A C H sing 1.09 N N
19 O21 C2 O C sing 1.45 N N
20 C2 C3 C C sing 1.53 N N
21 C2 H2 C H sing 1.09 N N
22 O31 C3 O C sing 1.45 N N
23 C3 H3 C H sing 1.09 N N
24 C3 H3A C H sing 1.09 N N
25 O31 C31 O C sing 1.34 N N
26 C31 O32 C O doub 1.21 N N
27 C32 C31 C C sing 1.51 N N
28 C33 C32 C C sing 1.53 N N
29 C32 H32 C H sing 1.09 N N
30 C32 H32A C H sing 1.09 N N
31 C34 C33 C C sing 1.53 N N
32 C33 H33 C H sing 1.09 N N
33 C33 H33A C H sing 1.09 N N
34 C35 C34 C C sing 1.53 N N
35 C34 H34 C H sing 1.09 N N
36 C34 H34A C H sing 1.09 N N
37 C36 C35 C C sing 1.53 N N
38 C35 H35 C H sing 1.09 N N
39 C35 H35A C H sing 1.09 N N
40 C37 C36 C C sing 1.53 N N
41 C36 H36 C H sing 1.09 N N
42 C36 H36A C H sing 1.09 N N
43 C37 H37 C H sing 1.09 N N
44 C37 H37A C H sing 1.09 N N
45 C37 H37B C H sing 1.09 N N
46 C21 O21 C O sing 1.34 N N
47 O22 C21 O C doub 1.21 N N
48 C22 C21 C C sing 1.51 N N
49 C23 C22 C C sing 1.53 N N
50 C22 H22 C H sing 1.09 N N
51 C22 H22A C H sing 1.09 N N
52 C23 C24 C C sing 1.53 N N
53 C23 H23 C H sing 1.09 N N
54 C23 H23A C H sing 1.09 N N
55 C25 C24 C C sing 1.53 N N
56 C24 H24 C H sing 1.09 N N
57 C24 H24A C H sing 1.09 N N
58 C26 C25 C C sing 1.53 N N
59 C25 H25 C H sing 1.09 N N
60 C25 H25A C H sing 1.09 N N
61 C27 C26 C C sing 1.53 N N
62 C26 H26 C H sing 1.09 N N
63 C26 H26A C H sing 1.09 N N
64 C28 C27 C C sing 1.53 N N
65 C27 H27 C H sing 1.09 N N
66 C27 H27A C H sing 1.09 N N
67 C28 C29 C C sing 1.53 N N
68 C28 H28 C H sing 1.09 N N
69 C28 H28A C H sing 1.09 N N
70 C2A C29 C C sing 1.53 N N
71 C29 H29 C H sing 1.09 N N
72 C29 H29A C H sing 1.09 N N
73 C2A C2B C C sing 1.53 N N
74 C2A H2A C H sing 1.09 N N
75 C2A H2AA C H sing 1.09 N N
76 C2C C2B C C sing 1.53 N N
77 C2B H2B C H sing 1.09 N N
78 C2B H2BA C H sing 1.09 N N
79 C2C C2D C C sing 1.53 N N
80 C2C H2C C H sing 1.09 N N
81 C2C H2CA C H sing 1.09 N N
82 C2E C2D C C sing 1.53 N N
83 C2D H2D C H sing 1.09 N N
84 C2D H2DA C H sing 1.09 N N
85 C2E C2F C C sing 1.53 N N
86 C2E H2E C H sing 1.09 N N
87 C2E H2EA C H sing 1.09 N N
88 C2G C2F C C sing 1.53 N N
89 C2F H2F C H sing 1.09 N N
90 C2F H2FA C H sing 1.09 N N
91 C2H C2G C C sing 1.53 N N
92 C2G H2G C H sing 1.09 N N
93 C2G H2GA C H sing 1.09 N N
94 C2I C2H C C sing 1.53 N N
95 C2H H2H C H sing 1.09 N N
96 C2H H2HA C H sing 1.09 N N
97 C2I H2I C H sing 1.09 N N
98 C2I H2IA C H sing 1.09 N N
99 C2I H2IB C H sing 1.09 N N