data_9PE
#
_chem_comp.id 9PE
_chem_comp.name "(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C30 H60 N O8 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms 3-SN-PHOSPHATIDYLETHANOLAMINE
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2008-04-28
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 593.773
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 9PE
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3CX5
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
9PE P P P 0 1 N N S N N N 12.706 8.533 58.505 -5.574 2.729 -0.696 P 9PE 1
9PE N N N 0 1 N N N N N N 15.090 10.597 62.204 -8.658 0.669 -3.064 N 9PE 2
9PE O11 O11 O 0 1 N N N N N N 12.847 7.001 58.665 -4.967 1.706 0.389 O11 9PE 3
9PE O12 O12 O 0 1 N N N N N N 13.006 8.873 57.070 -6.527 3.645 -0.032 O12 9PE 4
9PE O13 O13 O 0 1 N N N N N N 13.720 9.299 59.434 -6.338 1.901 -1.846 O13 9PE 5
9PE O14 O14 O 0 1 N N N N N N 11.273 8.969 58.785 -4.378 3.584 -1.355 O14 9PE 6
9PE C11 C11 C 0 1 N N N N N N 13.620 9.087 60.869 -7.072 2.528 -2.899 C11 9PE 7
9PE C12 C12 C 0 1 N N N N N N 13.686 10.380 61.735 -7.669 1.455 -3.813 C12 9PE 8
9PE C1 C1 C 0 1 N N N N N N 11.734 6.230 59.034 -4.321 2.137 1.589 C1 9PE 9
9PE C2 C2 C 0 1 N N R N N N 12.103 4.795 58.687 -3.866 0.916 2.390 C2 9PE 10
9PE C3 C3 C 0 1 N N N N N N 12.201 3.849 59.922 -5.062 -0.005 2.639 C3 9PE 11
9PE O31 O31 O 0 1 N N N N N N 12.557 2.557 59.408 -5.685 -0.343 1.371 O31 9PE 12
9PE O32 O32 O 0 1 N N N N N N 12.600 1.701 61.487 -7.161 -1.561 2.477 O32 9PE 13
9PE C31 C31 C 0 1 N N N N N N 12.717 1.598 60.311 -6.756 -1.150 1.415 C31 9PE 14
9PE C32 C32 C 0 1 N N N N N N 13.091 0.286 59.649 -7.455 -1.545 0.139 C32 9PE 15
9PE C33 C33 C 0 1 N N N N N N 13.433 0.320 58.166 -8.635 -2.461 0.466 C33 9PE 16
9PE C34 C34 C 0 1 N N N N N N 13.734 -1.107 57.714 -9.344 -2.862 -0.830 C34 9PE 17
9PE C35 C35 C 0 1 N N N N N N 13.536 -1.333 56.214 -10.525 -3.779 -0.502 C35 9PE 18
9PE C36 C36 C 0 1 N N N N N N 13.872 -2.798 55.880 -11.234 -4.179 -1.798 C36 9PE 19
9PE C37 C37 C 0 1 N N N N N N 13.480 -3.197 54.457 -12.414 -5.096 -1.471 C37 9PE 20
9PE O21 O21 O 0 1 N N N N N N 11.138 4.292 57.766 -2.849 0.197 1.643 O21 9PE 21
9PE O22 O22 O 0 1 N N N N N N 13.016 3.946 56.413 -1.313 1.439 2.633 O22 9PE 22
9PE C21 C21 C 0 1 N N N N N N 11.792 3.894 56.624 -1.573 0.555 1.852 C21 9PE 23
9PE C22 C22 C 0 1 N N N N N N 10.800 3.361 55.593 -0.463 -0.146 1.111 C22 9PE 24
9PE C23 C23 C 0 1 N N N N N N 11.492 2.911 54.285 0.883 0.448 1.529 C23 9PE 25
9PE C24 C24 C 0 1 N N N N N N 11.811 1.434 54.368 2.010 -0.263 0.777 C24 9PE 26
9PE C25 C25 C 0 1 N N N N N N 11.407 0.711 53.081 3.357 0.331 1.195 C25 9PE 27
9PE C26 C26 C 0 1 N N N N N N 12.530 0.870 52.063 4.484 -0.381 0.444 C26 9PE 28
9PE C27 C27 C 0 1 N N N N N N 12.707 -0.372 51.159 5.830 0.213 0.861 C27 9PE 29
9PE C28 C28 C 0 1 N N N N N N 13.367 -0.158 49.786 6.957 -0.498 0.110 C28 9PE 30
9PE C29 C29 C 0 1 N N N N N N 14.857 -0.522 49.980 8.303 0.096 0.528 C29 9PE 31
9PE C2A C2A C 0 1 N N N N N N 15.787 -0.135 48.805 9.430 -0.616 -0.224 C2A 9PE 32
9PE C2B C2B C 0 1 N N N N N N 17.025 0.633 49.325 10.777 -0.022 0.194 C2B 9PE 33
9PE C2C C2C C 0 1 N N N N N N 18.252 0.109 48.536 11.903 -0.733 -0.558 C2C 9PE 34
9PE C2D C2D C 0 1 N N N N N N 19.469 -0.028 49.461 13.250 -0.139 -0.140 C2D 9PE 35
9PE C2E C2E C 0 1 N N N N N N 20.539 -0.948 48.841 14.377 -0.851 -0.891 C2E 9PE 36
9PE C2F C2F C 0 1 N N N N N N 20.561 -2.275 49.621 15.723 -0.257 -0.474 C2F 9PE 37
9PE C2G C2G C 0 1 N N N N N N 21.593 -3.270 49.060 16.850 -0.969 -1.225 C2G 9PE 38
9PE C2H C2H C 0 1 N N N N N N 20.872 -4.387 48.277 18.197 -0.374 -0.808 C2H 9PE 39
9PE C2I C2I C 0 1 N N N N N N 21.905 -5.339 47.630 19.323 -1.086 -1.559 C2I 9PE 40
9PE HN HN H 0 1 N N N N N N 15.702 10.645 61.415 -9.370 1.265 -2.670 HN 9PE 41
9PE HNA HNA H 0 1 N N N N N N 15.141 11.453 62.718 -9.067 -0.047 -3.646 HNA 9PE 42
9PE HO14 HO14 H 0 0 N N N N N N 11.147 9.060 59.722 -3.714 3.046 -1.808 HO14 9PE 43
9PE H11 H11 H 0 1 N N N N N N 12.653 8.602 61.067 -7.875 3.130 -2.474 H11 9PE 44
9PE H11A H11A H 0 0 N N N N N N 14.492 8.480 61.153 -6.405 3.167 -3.477 H11A 9PE 45
9PE H12 H12 H 0 1 N N N N N N 13.022 10.272 62.605 -6.876 0.798 -4.168 H12 9PE 46
9PE H12A H12A H 0 0 N N N N N N 13.364 11.242 61.131 -8.154 1.933 -4.665 H12A 9PE 47
9PE H1 H1 H 0 1 N N N N N N 11.527 6.332 60.109 -3.455 2.748 1.335 H1 9PE 48
9PE H1A H1A H 0 1 N N N N N N 10.823 6.554 58.510 -5.018 2.725 2.186 H1A 9PE 49
9PE H2 H2 H 0 1 N N N N N N 13.111 4.815 58.247 -3.453 1.241 3.345 H2 9PE 50
9PE H3 H3 H 0 1 N N N N N N 12.966 4.210 60.626 -4.723 -0.916 3.132 H3 9PE 51
9PE H3A H3A H 0 1 N N N N N N 11.250 3.812 60.474 -5.787 0.504 3.275 H3A 9PE 52
9PE H32 H32 H 0 1 N N N N N N 13.980 -0.094 60.173 -7.819 -0.650 -0.368 H32 9PE 53
9PE H32A H32A H 0 0 N N N N N N 12.187 -0.337 59.719 -6.755 -2.071 -0.511 H32A 9PE 54
9PE H33 H33 H 0 1 N N N N N N 12.583 0.722 57.595 -8.271 -3.356 0.972 H33 9PE 55
9PE H33A H33A H 0 0 N N N N N N 14.307 0.966 57.992 -9.335 -1.935 1.115 H33A 9PE 56
9PE H34 H34 H 0 1 N N N N N N 14.784 -1.327 57.957 -9.708 -1.968 -1.336 H34 9PE 57
9PE H34A H34A H 0 0 N N N N N N 13.027 -1.768 58.237 -8.645 -3.388 -1.479 H34A 9PE 58
9PE H35 H35 H 0 1 N N N N N N 12.491 -1.122 55.943 -10.161 -4.673 0.004 H35 9PE 59
9PE H35A H35A H 0 0 N N N N N N 14.197 -0.661 55.646 -11.224 -3.253 0.147 H35A 9PE 60
9PE H36 H36 H 0 1 N N N N N N 14.958 -2.936 55.989 -11.597 -3.285 -2.304 H36 9PE 61
9PE H36A H36A H 0 0 N N N N N N 13.296 -3.433 56.570 -10.534 -4.705 -2.447 H36A 9PE 62
9PE H37 H37 H 0 1 N N N N N N 13.386 -2.294 53.835 -13.114 -4.570 -0.821 H37 9PE 63
9PE H37A H37A H 0 0 N N N N N N 14.254 -3.854 54.034 -12.919 -5.381 -2.393 H37A 9PE 64
9PE H37B H37B H 0 0 N N N N N N 12.518 -3.730 54.478 -12.050 -5.990 -0.964 H37B 9PE 65
9PE H22 H22 H 0 1 N N N N N N 10.277 2.496 56.027 -0.481 -1.209 1.351 H22 9PE 66
9PE H22A H22A H 0 0 N N N N N N 10.104 4.176 55.343 -0.601 -0.013 0.038 H22A 9PE 67
9PE H23 H23 H 0 1 N N N N N N 10.821 3.094 53.433 0.902 1.512 1.289 H23 9PE 68
9PE H23A H23A H 0 0 N N N N N N 12.423 3.481 54.147 1.022 0.316 2.602 H23A 9PE 69
9PE H24 H24 H 0 1 N N N N N N 12.893 1.310 54.522 1.992 -1.326 1.017 H24 9PE 70
9PE H24A H24A H 0 0 N N N N N N 11.246 1.000 55.206 1.872 -0.131 -0.296 H24A 9PE 71
9PE H25 H25 H 0 1 N N N N N N 11.242 -0.356 53.290 3.375 1.394 0.955 H25 9PE 72
9PE H25A H25A H 0 0 N N N N N N 10.476 1.142 52.684 3.495 0.198 2.268 H25A 9PE 73
9PE H26 H26 H 0 1 N N N N N N 12.296 1.733 51.422 4.465 -1.444 0.684 H26 9PE 74
9PE H26A H26A H 0 0 N N N N N N 13.467 1.008 52.623 4.345 -0.248 -0.629 H26A 9PE 75
9PE H27 H27 H 0 1 N N N N N N 13.340 -1.083 51.711 5.848 1.276 0.622 H27 9PE 76
9PE H27A H27A H 0 0 N N N N N N 11.685 -0.712 50.936 5.969 0.081 1.934 H27A 9PE 77
9PE H28 H28 H 0 1 N N N N N N 12.903 -0.803 49.025 6.939 -1.561 0.350 H28 9PE 78
9PE H28A H28A H 0 0 N N N N N N 13.245 0.877 49.434 6.818 -0.366 -0.963 H28A 9PE 79
9PE H29 H29 H 0 1 N N N N N N 15.215 0.006 50.876 8.322 1.159 0.288 H29 9PE 80
9PE H29A H29A H 0 0 N N N N N N 14.900 -1.618 50.060 8.442 -0.037 1.601 H29A 9PE 81
9PE H2A H2A H 0 1 N N N N N N 16.119 -1.049 48.292 9.412 -1.679 0.016 H2A 9PE 82
9PE H2AA H2AA H 0 0 N N N N N N 15.232 0.512 48.109 9.292 -0.483 -1.297 H2AA 9PE 83
9PE H2B H2B H 0 1 N N N N N N 16.900 1.713 49.161 10.795 1.041 -0.046 H2B 9PE 84
9PE H2BA H2BA H 0 0 N N N N N N 17.158 0.473 50.405 10.915 -0.154 1.267 H2BA 9PE 85
9PE H2C H2C H 0 1 N N N N N N 18.012 -0.876 48.109 11.885 -1.797 -0.318 H2C 9PE 86
9PE H2CA H2CA H 0 0 N N N N N N 18.492 0.824 47.736 11.765 -0.601 -1.631 H2CA 9PE 87
9PE H2D H2D H 0 1 N N N N N N 19.907 0.968 49.624 13.268 0.924 -0.380 H2D 9PE 88
9PE H2DA H2DA H 0 0 N N N N N N 19.137 -0.470 50.412 13.389 -0.272 0.933 H2DA 9PE 89
9PE H2E H2E H 0 1 N N N N N N 20.296 -1.142 47.786 14.359 -1.914 -0.651 H2E 9PE 90
9PE H2EA H2EA H 0 0 N N N N N N 21.526 -0.465 48.896 14.238 -0.718 -1.964 H2EA 9PE 91
9PE H2F H2F H 0 1 N N N N N N 20.818 -2.060 50.669 15.741 0.806 -0.714 H2F 9PE 92
9PE H2FA H2FA H 0 0 N N N N N N 19.566 -2.735 49.530 15.862 -0.389 0.599 H2FA 9PE 93
9PE H2G H2G H 0 1 N N N N N N 22.282 -2.739 48.386 16.832 -2.032 -0.985 H2G 9PE 94
9PE H2GA H2GA H 0 0 N N N N N N 22.157 -3.716 49.893 16.712 -0.836 -2.298 H2GA 9PE 95
9PE H2H H2H H 0 1 N N N N N N 20.235 -4.959 48.967 18.215 0.689 -1.047 H2H 9PE 96
9PE H2HA H2HA H 0 0 N N N N N N 20.258 -3.932 47.486 18.335 -0.507 0.266 H2HA 9PE 97
9PE H2I H2I H 0 1 N N N N N N 21.600 -5.565 46.598 19.305 -2.149 -1.319 H2I 9PE 98
9PE H2IA H2IA H 0 0 N N N N N N 22.894 -4.857 47.623 19.185 -0.953 -2.632 H2IA 9PE 99
9PE H2IB H2IB H 0 0 N N N N N N 21.956 -6.273 48.210 20.283 -0.663 -1.261 H2IB 9PE 100
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
9PE O12 P DOUB N N 1
9PE P O11 SING N N 2
9PE P O14 SING N N 3
9PE P O13 SING N N 4
9PE C12 N SING N N 5
9PE N HN SING N N 6
9PE N HNA SING N N 7
9PE O11 C1 SING N N 8
9PE O13 C11 SING N N 9
9PE O14 HO14 SING N N 10
9PE C11 C12 SING N N 11
9PE C11 H11 SING N N 12
9PE C11 H11A SING N N 13
9PE C12 H12 SING N N 14
9PE C12 H12A SING N N 15
9PE C2 C1 SING N N 16
9PE C1 H1 SING N N 17
9PE C1 H1A SING N N 18
9PE O21 C2 SING N N 19
9PE C2 C3 SING N N 20
9PE C2 H2 SING N N 21
9PE O31 C3 SING N N 22
9PE C3 H3 SING N N 23
9PE C3 H3A SING N N 24
9PE O31 C31 SING N N 25
9PE C31 O32 DOUB N N 26
9PE C32 C31 SING N N 27
9PE C33 C32 SING N N 28
9PE C32 H32 SING N N 29
9PE C32 H32A SING N N 30
9PE C34 C33 SING N N 31
9PE C33 H33 SING N N 32
9PE C33 H33A SING N N 33
9PE C35 C34 SING N N 34
9PE C34 H34 SING N N 35
9PE C34 H34A SING N N 36
9PE C36 C35 SING N N 37
9PE C35 H35 SING N N 38
9PE C35 H35A SING N N 39
9PE C37 C36 SING N N 40
9PE C36 H36 SING N N 41
9PE C36 H36A SING N N 42
9PE C37 H37 SING N N 43
9PE C37 H37A SING N N 44
9PE C37 H37B SING N N 45
9PE C21 O21 SING N N 46
9PE O22 C21 DOUB N N 47
9PE C22 C21 SING N N 48
9PE C23 C22 SING N N 49
9PE C22 H22 SING N N 50
9PE C22 H22A SING N N 51
9PE C23 C24 SING N N 52
9PE C23 H23 SING N N 53
9PE C23 H23A SING N N 54
9PE C25 C24 SING N N 55
9PE C24 H24 SING N N 56
9PE C24 H24A SING N N 57
9PE C26 C25 SING N N 58
9PE C25 H25 SING N N 59
9PE C25 H25A SING N N 60
9PE C27 C26 SING N N 61
9PE C26 H26 SING N N 62
9PE C26 H26A SING N N 63
9PE C28 C27 SING N N 64
9PE C27 H27 SING N N 65
9PE C27 H27A SING N N 66
9PE C28 C29 SING N N 67
9PE C28 H28 SING N N 68
9PE C28 H28A SING N N 69
9PE C2A C29 SING N N 70
9PE C29 H29 SING N N 71
9PE C29 H29A SING N N 72
9PE C2A C2B SING N N 73
9PE C2A H2A SING N N 74
9PE C2A H2AA SING N N 75
9PE C2C C2B SING N N 76
9PE C2B H2B SING N N 77
9PE C2B H2BA SING N N 78
9PE C2C C2D SING N N 79
9PE C2C H2C SING N N 80
9PE C2C H2CA SING N N 81
9PE C2E C2D SING N N 82
9PE C2D H2D SING N N 83
9PE C2D H2DA SING N N 84
9PE C2E C2F SING N N 85
9PE C2E H2E SING N N 86
9PE C2E H2EA SING N N 87
9PE C2G C2F SING N N 88
9PE C2F H2F SING N N 89
9PE C2F H2FA SING N N 90
9PE C2H C2G SING N N 91
9PE C2G H2G SING N N 92
9PE C2G H2GA SING N N 93
9PE C2I C2H SING N N 94
9PE C2H H2H SING N N 95
9PE C2H H2HA SING N N 96
9PE C2I H2I SING N N 97
9PE C2I H2IA SING N N 98
9PE C2I H2IB SING N N 99
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
9PE SMILES ACDLabs 10.04 O=C(OCC(OC(=O)CCCCCCCCCCCCCCCCC)COP(=O)(OCCN)O)CCCCCC
9PE SMILES_CANONICAL CACTVS 3.341 CCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCC)CO[P@](O)(=O)OCCN
9PE SMILES CACTVS 3.341 CCCCCCCCCCCCCCCCCC(=O)O[CH](COC(=O)CCCCCC)CO[P](O)(=O)OCCN
9PE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCCCCCCC(=O)O[C@H](COC(=O)CCCCCC)CO[P@@](=O)(O)OCCN
9PE SMILES "OpenEye OEToolkits" 1.5.0 CCCCCCCCCCCCCCCCCC(=O)OC(COC(=O)CCCCCC)COP(=O)(O)OCCN
9PE InChI InChI 1.03 InChI=1S/C30H60NO8P/c1-3-5-7-9-10-11-12-13-14-15-16-17-18-19-21-23-30(33)39-28(27-38-40(34,35)37-25-24-31)26-36-29(32)22-20-8-6-4-2/h28H,3-27,31H2,1-2H3,(H,34,35)/t28-/m1/s1
9PE InChIKey InChI 1.03 RWBMCOYSJCETON-MUUNZHRXSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
9PE "SYSTEMATIC NAME" ACDLabs 10.04 "(1R)-2-{[(S)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-1-[(heptanoyloxy)methyl]ethyl octadecanoate"
9PE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R)-1-(2-aminoethoxy-hydroxy-phosphoryl)oxy-3-heptanoyloxy-propan-2-yl] octadecanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
9PE 'Create component' 2008-04-28 RCSB
9PE 'Modify descriptor' 2011-06-04 RCSB
9PE 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 9PE
_pdbx_chem_comp_synonyms.name 3-SN-PHOSPHATIDYLETHANOLAMINE
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 9PE
_pdbe_chem_comp_synonyms.name 3-SN-PHOSPHATIDYLETHANOLAMINE
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
9PE P P 9.002 -4.976 1
9PE N N 3.805 -4.976 2
9PE O11 O 10.301 -4.226 3
9PE O12 O 8.252 -3.676 4
9PE O13 O 7.702 -5.726 5
9PE O14 O 9.752 -6.274 6
9PE C11 C 6.404 -4.976 7
9PE C12 C 5.104 -5.726 8
9PE C1 C 11.600 -4.976 9
9PE C2 C 12.899 -4.226 10
9PE C3 C 12.899 -2.725 11
9PE O31 O 14.198 -1.976 12
9PE O32 O 12.899 0.275 13
9PE C31 C 14.198 -0.475 14
9PE C32 C 15.497 0.275 15
9PE C33 C 15.497 1.774 16
9PE C34 C 16.796 2.525 17
9PE C35 C 16.796 4.024 18
9PE C36 C 18.095 4.774 19
9PE C37 C 18.095 6.274 20
9PE O21 O 14.198 -4.976 21
9PE O22 O 15.497 -2.725 22
9PE C21 C 15.497 -4.226 23
9PE C22 C 16.796 -4.976 24
9PE C23 C 18.095 -4.226 25
9PE C24 C 19.394 -4.976 26
9PE C25 C 20.693 -4.226 27
9PE C26 C 21.992 -4.976 28
9PE C27 C 23.291 -4.226 29
9PE C28 C 24.590 -4.976 30
9PE C29 C 25.889 -4.226 31
9PE C2A C 27.188 -4.976 32
9PE C2B C 28.487 -4.226 33
9PE C2C C 29.786 -4.976 34
9PE C2D C 31.085 -4.226 35
9PE C2E C 32.384 -4.976 36
9PE C2F C 33.683 -4.226 37
9PE C2G C 34.982 -4.976 38
9PE C2H C 36.281 -4.226 39
9PE C2I C 37.580 -4.976 40
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
9PE O12 P DOUBLE NONE 1
9PE P O11 SINGLE NONE 2
9PE P O14 SINGLE BEGINDASH 3
9PE P O13 SINGLE NONE 4
9PE C12 N SINGLE NONE 5
9PE O11 C1 SINGLE NONE 6
9PE O13 C11 SINGLE NONE 7
9PE C11 C12 SINGLE NONE 8
9PE C2 C1 SINGLE BEGINWEDGE 9
9PE O21 C2 SINGLE NONE 10
9PE C2 C3 SINGLE NONE 11
9PE O31 C3 SINGLE NONE 12
9PE O31 C31 SINGLE NONE 13
9PE C31 O32 DOUBLE NONE 14
9PE C32 C31 SINGLE NONE 15
9PE C33 C32 SINGLE NONE 16
9PE C34 C33 SINGLE NONE 17
9PE C35 C34 SINGLE NONE 18
9PE C36 C35 SINGLE NONE 19
9PE C37 C36 SINGLE NONE 20
9PE C21 O21 SINGLE NONE 21
9PE O22 C21 DOUBLE NONE 22
9PE C22 C21 SINGLE NONE 23
9PE C23 C22 SINGLE NONE 24
9PE C23 C24 SINGLE NONE 25
9PE C25 C24 SINGLE NONE 26
9PE C26 C25 SINGLE NONE 27
9PE C27 C26 SINGLE NONE 28
9PE C28 C27 SINGLE NONE 29
9PE C28 C29 SINGLE NONE 30
9PE C2A C29 SINGLE NONE 31
9PE C2A C2B SINGLE NONE 32
9PE C2C C2B SINGLE NONE 33
9PE C2C C2D SINGLE NONE 34
9PE C2E C2D SINGLE NONE 35
9PE C2E C2F SINGLE NONE 36
9PE C2G C2F SINGLE NONE 37
9PE C2H C2G SINGLE NONE 38
9PE C2I C2H SINGLE NONE 39
#
_pdbe_chem_comp_substructure.comp_id 9PE
_pdbe_chem_comp_substructure.substructure_name phosphate
_pdbe_chem_comp_substructure.id F1
_pdbe_chem_comp_substructure.substructure_type fragment
_pdbe_chem_comp_substructure.substructure_smiles O=P(O)(O)O
_pdbe_chem_comp_substructure.substructure_inchis InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4)
_pdbe_chem_comp_substructure.substructure_inchikeys NBIIXXVUZAFLBC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
9PE O11 F1 1
9PE P F1 1
9PE O12 F1 1
9PE O14 F1 1
9PE O13 F1 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 9PE
_pdbe_chem_comp_rdkit_properties.exactmw 593.406
_pdbe_chem_comp_rdkit_properties.amw 593.783
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 3
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 34
_pdbe_chem_comp_rdkit_properties.NumHBD 2
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 40
_pdbe_chem_comp_rdkit_properties.NumAtoms 100
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.933
_pdbe_chem_comp_rdkit_properties.NumRings 0
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 2
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 328.285
_pdbe_chem_comp_rdkit_properties.tpsa 134.380
_pdbe_chem_comp_rdkit_properties.CrippenClogP 7.766
_pdbe_chem_comp_rdkit_properties.CrippenMR 159.928
_pdbe_chem_comp_rdkit_properties.chi0v 20.055
_pdbe_chem_comp_rdkit_properties.chi1v 10.547
_pdbe_chem_comp_rdkit_properties.chi2v 2.906
_pdbe_chem_comp_rdkit_properties.chi3v 2.906
_pdbe_chem_comp_rdkit_properties.chi4v 1.509
_pdbe_chem_comp_rdkit_properties.chi0n 79.160
_pdbe_chem_comp_rdkit_properties.chi1n 38.890
_pdbe_chem_comp_rdkit_properties.chi2n 2.276
_pdbe_chem_comp_rdkit_properties.chi3n 2.276
_pdbe_chem_comp_rdkit_properties.chi4n 1.125
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -0.990
_pdbe_chem_comp_rdkit_properties.kappa1 5.867
_pdbe_chem_comp_rdkit_properties.kappa2 28.145
_pdbe_chem_comp_rdkit_properties.kappa3 27.193
_pdbe_chem_comp_rdkit_properties.Phi 4.128
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
9PE UniChem ZINC ZINC000058626859
9PE UniChem PubChem 24779687
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
9PE P -5.131 2.882 -0.875 ETKDGv3 1
9PE N -8.964 2.255 2.246 ETKDGv3 2
9PE O11 -4.628 1.316 -0.421 ETKDGv3 3
9PE O12 -4.390 3.916 -0.056 ETKDGv3 4
9PE O13 -6.809 3.059 -0.619 ETKDGv3 5
9PE O14 -4.812 3.139 -2.518 ETKDGv3 6
9PE C11 -7.128 2.519 0.642 ETKDGv3 7
9PE C12 -8.586 2.839 0.962 ETKDGv3 8
9PE C1 -3.289 1.137 -0.821 ETKDGv3 9
9PE C2 -2.804 -0.263 -0.403 ETKDGv3 10
9PE C3 -3.585 -1.367 -1.126 ETKDGv3 11
9PE O31 -4.949 -1.341 -0.721 ETKDGv3 12
9PE O32 -5.631 -3.018 -2.160 ETKDGv3 13
9PE C31 -5.931 -2.154 -1.292 ETKDGv3 14
9PE C32 -7.359 -1.939 -0.907 ETKDGv3 15
9PE C33 -7.948 -0.763 -1.697 ETKDGv3 16
9PE C34 -9.308 -0.308 -1.150 ETKDGv3 17
9PE C35 -10.414 -1.355 -1.359 ETKDGv3 18
9PE C36 -11.810 -0.804 -1.033 ETKDGv3 19
9PE C37 -11.996 -0.503 0.454 ETKDGv3 20
9PE O21 -1.419 -0.410 -0.717 ETKDGv3 21
9PE O22 -0.643 0.807 1.093 ETKDGv3 22
9PE C21 -0.389 0.156 0.042 ETKDGv3 23
9PE C22 1.032 -0.050 -0.380 ETKDGv3 24
9PE C23 1.487 -1.502 -0.165 ETKDGv3 25
9PE C24 1.438 -1.972 1.303 ETKDGv3 26
9PE C25 2.290 -1.143 2.285 ETKDGv3 27
9PE C26 3.780 -1.024 1.917 ETKDGv3 28
9PE C27 4.501 -2.383 1.899 ETKDGv3 29
9PE C28 6.004 -2.239 1.611 ETKDGv3 30
9PE C29 6.804 -1.807 2.853 ETKDGv3 31
9PE C2A 8.299 -1.591 2.535 ETKDGv3 32
9PE C2B 8.703 -0.107 2.436 ETKDGv3 33
9PE C2C 8.031 0.670 1.291 ETKDGv3 34
9PE C2D 8.513 0.214 -0.098 ETKDGv3 35
9PE C2E 7.865 1.028 -1.232 ETKDGv3 36
9PE C2F 8.485 2.433 -1.411 ETKDGv3 37
9PE C2G 9.409 2.546 -2.638 ETKDGv3 38
9PE C2H 10.696 1.709 -2.546 ETKDGv3 39
9PE C2I 11.668 2.231 -1.487 ETKDGv3 40
9PE HN -9.943 2.557 2.455 ETKDGv3 41
9PE HNA -8.992 1.215 2.138 ETKDGv3 42
9PE HO14 -5.198 4.030 -2.714 ETKDGv3 43
9PE H11 -6.494 2.961 1.445 ETKDGv3 44
9PE H11A -7.002 1.413 0.628 ETKDGv3 45
9PE H12 -8.713 3.942 1.010 ETKDGv3 46
9PE H12A -9.247 2.446 0.158 ETKDGv3 47
9PE H1 -2.638 1.895 -0.331 ETKDGv3 48
9PE H1A -3.187 1.231 -1.926 ETKDGv3 49
9PE H2 -2.951 -0.395 0.693 ETKDGv3 50
9PE H3 -3.147 -2.356 -0.869 ETKDGv3 51
9PE H3A -3.513 -1.222 -2.227 ETKDGv3 52
9PE H32 -7.940 -2.865 -1.108 ETKDGv3 53
9PE H32A -7.404 -1.727 0.183 ETKDGv3 54
9PE H33 -7.253 0.104 -1.636 ETKDGv3 55
9PE H33A -8.044 -1.039 -2.770 ETKDGv3 56
9PE H34 -9.204 -0.078 -0.069 ETKDGv3 57
9PE H34A -9.592 0.631 -1.674 ETKDGv3 58
9PE H35 -10.411 -1.679 -2.423 ETKDGv3 59
9PE H35A -10.217 -2.250 -0.730 ETKDGv3 60
9PE H36 -12.006 0.116 -1.625 ETKDGv3 61
9PE H36A -12.565 -1.563 -1.333 ETKDGv3 62
9PE H37 -11.741 -1.394 1.067 ETKDGv3 63
9PE H37A -13.055 -0.234 0.647 ETKDGv3 64
9PE H37B -11.361 0.353 0.764 ETKDGv3 65
9PE H22 1.113 0.190 -1.462 ETKDGv3 66
9PE H22A 1.703 0.653 0.157 ETKDGv3 67
9PE H23 2.515 -1.624 -0.565 ETKDGv3 68
9PE H23A 0.836 -2.173 -0.768 ETKDGv3 69
9PE H24 1.755 -3.035 1.347 ETKDGv3 70
9PE H24A 0.383 -1.953 1.654 ETKDGv3 71
9PE H25 1.861 -0.123 2.373 ETKDGv3 72
9PE H25A 2.208 -1.603 3.294 ETKDGv3 73
9PE H26 3.894 -0.518 0.935 ETKDGv3 74
9PE H26A 4.253 -0.364 2.674 ETKDGv3 75
9PE H27 4.065 -3.011 1.094 ETKDGv3 76
9PE H27A 4.346 -2.914 2.864 ETKDGv3 77
9PE H28 6.390 -3.227 1.276 ETKDGv3 78
9PE H28A 6.153 -1.529 0.773 ETKDGv3 79
9PE H29 6.371 -0.891 3.305 ETKDGv3 80
9PE H29A 6.716 -2.612 3.615 ETKDGv3 81
9PE H2A 8.606 -2.143 1.621 ETKDGv3 82
9PE H2AA 8.893 -2.032 3.366 ETKDGv3 83
9PE H2B 8.455 0.394 3.397 ETKDGv3 84
9PE H2BA 9.807 -0.043 2.318 ETKDGv3 85
9PE H2C 8.279 1.744 1.428 ETKDGv3 86
9PE H2CA 6.927 0.588 1.366 ETKDGv3 87
9PE H2D 8.240 -0.850 -0.250 ETKDGv3 88
9PE H2DA 9.619 0.284 -0.155 ETKDGv3 89
9PE H2E 7.944 0.450 -2.178 ETKDGv3 90
9PE H2EA 6.776 1.129 -1.027 ETKDGv3 91
9PE H2F 9.020 2.771 -0.499 ETKDGv3 92
9PE H2FA 7.654 3.157 -1.560 ETKDGv3 93
9PE H2G 9.681 3.615 -2.784 ETKDGv3 94
9PE H2GA 8.845 2.235 -3.544 ETKDGv3 95
9PE H2H 11.207 1.752 -3.532 ETKDGv3 96
9PE H2HA 10.458 0.643 -2.350 ETKDGv3 97
9PE H2I 11.896 3.303 -1.665 ETKDGv3 98
9PE H2IA 12.615 1.655 -1.542 ETKDGv3 99
9PE H2IB 11.249 2.107 -0.468 ETKDGv3 100
#