Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 8YQ    

Bonds between two atoms of the molecule

Total Number of Bonds: 86


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O2 C19 O C sing 1.36 N N
2 O2 C18 O C sing 1.36 N N
3 C19 C20 C C doub 1.32 N N
4 N C N C sing 1.47 N N
5 C21 C18 C C doub 1.38 N Y
6 C21 C22 C C sing 1.38 N Y
7 C18 C17 C C sing 1.39 N Y
8 C C1 C C sing 1.51 N N
9 C20 O3 C O sing 1.36 N N
10 C22 C15 C C doub 1.39 N Y
11 C17 O3 C O sing 1.36 N N
12 C17 C16 C C doub 1.38 N Y
13 C1 C35 C C doub 1.38 N Y
14 C1 C2 C C sing 1.38 N Y
15 C35 C5 C C sing 1.38 N Y
16 C13 C12 C C sing 1.51 N N
17 C15 C16 C C sing 1.4 N Y
18 C15 C14 C C sing 1.48 N N
19 O6 C34 O C doub 1.21 N N
20 C32 C31 C C sing 1.55 N N
21 C32 C33 C C sing 1.55 N N
22 C2 C3 C C doub 1.38 N Y
23 C34 C33 C C sing 1.51 N N
24 C34 O5 C O sing 1.34 N N
25 O4 C31 O C sing 1.43 N N
26 C31 N1 C N sing 1.48 N N
27 C12 C14 C C doub 1.39 N Y
28 C12 C11 C C sing 1.38 N Y
29 C5 C6 C C sing 1.51 N N
30 C5 C4 C C doub 1.38 N Y
31 C33 C30 C C sing 1.54 N N
32 C14 C23 C C sing 1.39 N Y
33 C6 O C O sing 1.43 N N
34 C3 C4 C C sing 1.38 N Y
35 O C7 O C sing 1.36 N N
36 C11 C10 C C sing 1.51 N N
37 C11 C25 C C doub 1.38 N Y
38 C10 O1 C O sing 1.43 N N
39 C23 C24 C C doub 1.38 N Y
40 N1 C30 N C sing 1.48 N N
41 C8 C7 C C doub 1.39 N Y
42 C8 C9 C C sing 1.39 N Y
43 C7 C28 C C sing 1.39 N Y
44 C30 C29 C C sing 1.53 N N
45 O1 C9 O C sing 1.36 N N
46 C9 C26 C C doub 1.39 N Y
47 C28 C29 C C sing 1.51 N N
48 C28 C27 C C doub 1.38 N Y
49 C25 C24 C C sing 1.38 N Y
50 C26 C27 C C sing 1.38 N Y
51 C26 CL C CL sing 1.74 N N
52 C13 H1 C H sing 1.09 N N
53 C13 H2 C H sing 1.09 N N
54 C13 H3 C H sing 1.09 N N
55 C16 H4 C H sing 1.08 N N
56 C8 H5 C H sing 1.08 N N
57 C10 H6 C H sing 1.09 N N
58 C10 H7 C H sing 1.09 N N
59 N1 H8 N H sing 1.01 N N
60 C2 H10 C H sing 1.08 N N
61 C3 H11 C H sing 1.08 N N
62 C4 H12 C H sing 1.08 N N
63 C6 H13 C H sing 1.09 N N
64 C6 H14 C H sing 1.09 N N
65 O5 H15 O H sing 0.97 N N
66 N H16 N H sing 1.01 N N
67 N H17 N H sing 1.01 N N
68 C H19 C H sing 1.09 N N
69 C H20 C H sing 1.09 N N
70 O4 H21 O H sing 0.97 N N
71 C19 H22 C H sing 1.08 N N
72 C20 H23 C H sing 1.08 N N
73 C21 H24 C H sing 1.08 N N
74 C22 H25 C H sing 1.08 N N
75 C23 H26 C H sing 1.08 N N
76 C24 H27 C H sing 1.08 N N
77 C25 H28 C H sing 1.08 N N
78 C27 H29 C H sing 1.08 N N
79 C29 H30 C H sing 1.09 N N
80 C29 H31 C H sing 1.09 N N
81 C30 H32 C H sing 1.09 N N
82 C31 H33 C H sing 1.09 N N
83 C32 H34 C H sing 1.09 N N
84 C32 H35 C H sing 1.09 N N
85 C33 H36 C H sing 1.09 N N
86 C35 H37 C H sing 1.08 N N