data_8YQ
#
_chem_comp.id 8YQ
_chem_comp.name
"(2~{R},3~{R},5~{R})-2-[[2-[[3-(aminomethyl)phenyl]methoxy]-4-[[3-(1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-5-chloranyl-phenyl]methyl]-5-oxidanyl-pyrrolidine-3-carboxylic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C36 H35 Cl N2 O7"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2017-03-27
_chem_comp.pdbx_modified_date 2017-12-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 643.125
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 8YQ
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 5NIX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site EBI
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
8YQ C14 C1 C 0 1 Y N N N N N -3.366 61.513 -19.048 5.368 -1.271 -0.270 C14 8YQ 1
8YQ C13 C2 C 0 1 N N N N N N -5.169 60.416 -20.396 3.779 0.667 -0.075 C13 8YQ 2
8YQ C15 C3 C 0 1 Y N N N N N -2.367 61.425 -20.210 6.486 -0.303 -0.386 C15 8YQ 3
8YQ C17 C4 C 0 1 Y N N N N N -0.450 60.502 -21.154 8.658 0.456 0.303 C17 8YQ 4
8YQ C16 C5 C 0 1 Y N N N N N -1.340 60.559 -20.085 7.620 -0.447 0.415 C16 8YQ 5
8YQ C8 C6 C 0 1 Y N N N N N -9.823 60.340 -17.648 -1.038 -0.753 0.432 C8 8YQ 6
8YQ C10 C7 C 0 1 N N N N N N -7.000 60.751 -17.987 1.607 -1.224 0.139 C10 8YQ 7
8YQ C9 C8 C 0 1 Y N N N N N -9.135 61.442 -17.070 -0.604 -2.068 0.370 C9 8YQ 8
8YQ N1 N1 N 0 1 N N N N N N -13.672 63.172 -17.700 -5.345 -2.217 -1.339 N1 8YQ 9
8YQ C12 C9 C 0 1 Y N N N N N -4.681 61.054 -19.116 4.060 -0.813 -0.122 C12 8YQ 10
8YQ C11 C10 C 0 1 Y N N N N N -5.542 61.205 -18.021 3.022 -1.718 -0.020 C11 8YQ 11
8YQ O3 O1 O 0 1 N N N N N N 0.592 59.657 -21.017 9.772 0.333 1.074 O3 8YQ 12
8YQ C1 C11 C 0 1 Y N N N N N -13.642 55.521 -20.644 -3.513 5.059 -0.437 C1 8YQ 13
8YQ C2 C12 C 0 1 Y N N N N N -14.439 55.123 -19.547 -3.684 5.667 0.794 C2 8YQ 14
8YQ C3 C13 C 0 1 Y N N N N N -14.210 55.650 -18.259 -3.253 5.033 1.943 C3 8YQ 15
8YQ C4 C14 C 0 1 Y N N N N N -13.190 56.571 -18.034 -2.649 3.791 1.864 C4 8YQ 16
8YQ C5 C15 C 0 1 Y N N N N N -12.387 56.982 -19.107 -2.478 3.184 0.634 C5 8YQ 17
8YQ C6 C16 C 0 1 N N N N N N -11.296 58.003 -18.845 -1.821 1.831 0.547 C6 8YQ 18
8YQ C7 C17 C 0 1 Y N N N N N -11.226 60.191 -17.571 -2.388 -0.478 0.583 C7 8YQ 19
8YQ O5 O2 O 0 1 N N N N N N -15.896 59.357 -18.929 -7.032 1.231 1.270 O5 8YQ 20
8YQ N N2 N 0 1 N N N N N N -12.866 54.406 -22.885 -5.367 5.369 -1.977 N 8YQ 21
8YQ C C18 C 0 1 N N N N N N -13.977 54.914 -22.076 -3.978 5.753 -1.691 C 8YQ 22
8YQ O O3 O 0 1 N N N N N N -11.935 59.046 -18.178 -2.817 0.811 0.644 O 8YQ 23
8YQ CL CL1 CL 0 0 N N N N N N -9.039 63.818 -15.657 -0.979 -4.753 0.379 CL 8YQ 24
8YQ O1 O4 O 0 1 N N N N N N -7.702 61.648 -17.109 0.720 -2.341 0.223 O1 8YQ 25
8YQ O2 O5 O 0 1 N N N N N N 0.323 61.110 -23.316 9.605 2.389 -0.707 O2 8YQ 26
8YQ O4 O6 O 0 1 N N N N N N -14.930 64.455 -19.189 -7.066 -2.098 -2.989 O4 8YQ 27
8YQ O6 O7 O 0 1 N N N N N N -14.123 59.537 -20.103 -7.483 -0.842 1.887 O6 8YQ 28
8YQ C18 C19 C 0 1 Y N N N N N -0.600 61.265 -22.320 8.573 1.508 -0.609 C18 8YQ 29
8YQ C19 C20 C 0 1 N N N N N N 1.403 60.264 -23.167 10.792 2.043 -0.139 C19 8YQ 30
8YQ C20 C21 C 0 1 N N N N N N 1.523 59.505 -22.017 10.872 1.050 0.721 C20 8YQ 31
8YQ C21 C22 C 0 1 Y N N N N N -1.650 62.138 -22.466 7.453 1.643 -1.412 C21 8YQ 32
8YQ C22 C23 C 0 1 Y N N N N N -2.556 62.188 -21.399 6.409 0.745 -1.299 C22 8YQ 33
8YQ C23 C24 C 0 1 Y N N N N N -2.902 62.068 -17.859 5.620 -2.641 -0.313 C23 8YQ 34
8YQ C24 C25 C 0 1 Y N N N N N -3.796 62.198 -16.797 4.576 -3.536 -0.205 C24 8YQ 35
8YQ C25 C26 C 0 1 Y N N N N N -5.098 61.774 -16.852 3.279 -3.076 -0.064 C25 8YQ 36
8YQ C26 C27 C 0 1 Y N N N N N -9.896 62.391 -16.413 -1.521 -3.106 0.458 C26 8YQ 37
8YQ C27 C28 C 0 1 Y N N N N N -11.300 62.246 -16.325 -2.868 -2.829 0.608 C27 8YQ 38
8YQ C28 C29 C 0 1 Y N N N N N -11.979 61.159 -16.916 -3.302 -1.518 0.671 C28 8YQ 39
8YQ C29 C30 C 0 1 N N N N N N -13.528 61.026 -16.777 -4.770 -1.219 0.834 C29 8YQ 40
8YQ C30 C31 C 0 1 N N R N N N -14.379 62.054 -17.536 -5.398 -0.978 -0.540 C30 8YQ 41
8YQ C31 C32 C 0 1 N N R N N N -13.919 63.640 -19.172 -6.726 -2.605 -1.697 C31 8YQ 42
8YQ C32 C33 C 0 1 N N N N N N -14.209 62.289 -19.916 -7.615 -1.950 -0.610 C32 8YQ 43
8YQ C33 C34 C 0 1 N N R N N N -14.961 61.615 -19.057 -6.885 -0.601 -0.379 C33 8YQ 44
8YQ C34 C35 C 0 1 N N N N N N -14.976 60.077 -19.386 -7.156 -0.080 1.009 C34 8YQ 45
8YQ C35 C36 C 0 1 Y N N N N N -12.617 56.463 -20.405 -2.910 3.818 -0.516 C35 8YQ 46
8YQ H1 H1 H 0 1 N N N N N N -4.990 59.331 -20.357 3.600 1.035 -1.085 H1 8YQ 47
8YQ H2 H2 H 0 1 N N N N N N -6.246 60.606 -20.513 2.898 0.850 0.540 H2 8YQ 48
8YQ H3 H3 H 0 1 N N N N N N -4.626 60.846 -21.250 4.636 1.186 0.355 H3 8YQ 49
8YQ H4 H4 H 0 1 N N N N N N -1.215 59.945 -19.205 7.686 -1.261 1.122 H4 8YQ 50
8YQ H5 H5 H 0 1 N N N N N N -9.250 59.586 -18.167 -0.325 0.056 0.368 H5 8YQ 51
8YQ H6 H6 H 0 1 N N N N N N -7.433 60.796 -18.997 1.530 -0.630 1.050 H6 8YQ 52
8YQ H7 H7 H 0 1 N N N N N N -7.066 59.721 -17.606 1.338 -0.609 -0.720 H7 8YQ 53
8YQ H8 H8 H 0 1 N N N N N N -12.700 62.991 -17.553 -4.882 -2.955 -0.831 H8 8YQ 54
8YQ H10 H10 H 0 1 N N N N N N -15.233 54.407 -19.697 -4.155 6.636 0.856 H10 8YQ 55
8YQ H11 H11 H 0 1 N N N N N N -14.834 55.335 -17.436 -3.386 5.508 2.904 H11 8YQ 56
8YQ H12 H12 H 0 1 N N N N N N -13.019 56.965 -17.043 -2.312 3.296 2.762 H12 8YQ 57
8YQ H13 H13 H 0 1 N N N N N N -10.503 57.570 -18.217 -1.300 1.740 -0.406 H13 8YQ 58
8YQ H14 H14 H 0 1 N N N N N N -10.862 58.357 -19.792 -1.107 1.720 1.363 H14 8YQ 59
8YQ H15 H15 H 0 1 N N N N N N -15.777 58.463 -19.228 -7.216 1.518 2.175 H15 8YQ 60
8YQ H16 H16 H 0 1 N N N N N N -13.218 54.057 -23.753 -5.967 5.572 -1.191 H16 8YQ 61
8YQ H17 H17 H 0 1 N N N N N N -12.217 55.146 -23.062 -5.702 5.822 -2.814 H17 8YQ 62
8YQ H19 H19 H 0 1 N N N N N N -14.471 55.705 -22.659 -3.921 6.833 -1.551 H19 8YQ 63
8YQ H20 H20 H 0 1 N N N N N N -14.678 54.080 -21.922 -3.341 5.460 -2.526 H20 8YQ 64
8YQ H21 H21 H 0 1 N N N N N N -14.702 65.253 -18.727 -6.509 -2.437 -3.703 H21 8YQ 65
8YQ H22 H22 H 0 1 N N N N N N 2.150 60.195 -23.944 11.684 2.593 -0.399 H22 8YQ 66
8YQ H23 H23 H 0 1 N N N N N N 2.336 58.803 -21.906 11.829 0.800 1.155 H23 8YQ 67
8YQ H24 H24 H 0 1 N N N N N N -1.770 62.748 -23.349 7.394 2.454 -2.123 H24 8YQ 68
8YQ H25 H25 H 0 1 N N N N N N -3.425 62.824 -21.480 5.532 0.857 -1.920 H25 8YQ 69
8YQ H26 H26 H 0 1 N N N N N N -1.876 62.390 -17.761 6.631 -3.001 -0.433 H26 8YQ 70
8YQ H27 H27 H 0 1 N N N N N N -3.444 62.656 -15.884 4.770 -4.598 -0.238 H27 8YQ 71
8YQ H28 H28 H 0 1 N N N N N N -5.755 61.884 -16.002 2.464 -3.780 0.017 H28 8YQ 72
8YQ H29 H29 H 0 1 N N N N N N -11.870 62.990 -15.789 -3.581 -3.637 0.677 H29 8YQ 73
8YQ H30 H30 H 0 1 N N N N N N -13.775 61.112 -15.709 -5.262 -2.065 1.315 H30 8YQ 74
8YQ H31 H31 H 0 1 N N N N N N -13.811 60.027 -17.139 -4.893 -0.329 1.451 H31 8YQ 75
8YQ H32 H32 H 0 1 N N N N N N -15.270 62.258 -16.924 -4.864 -0.181 -1.057 H32 8YQ 76
8YQ H33 H33 H 0 1 N N N N N N -12.995 64.082 -19.572 -6.834 -3.689 -1.675 H33 8YQ 77
8YQ H34 H34 H 0 1 N N N N N N -14.751 62.467 -20.857 -8.628 -1.788 -0.980 H34 8YQ 78
8YQ H35 H35 H 0 1 N N N N N N -13.274 61.749 -20.128 -7.625 -2.550 0.300 H35 8YQ 79
8YQ H36 H36 H 0 1 N N N N N N -16.003 61.967 -19.097 -7.181 0.131 -1.131 H36 8YQ 80
8YQ H37 H37 H 0 1 N N N N N N -11.998 56.793 -21.226 -2.776 3.344 -1.477 H37 8YQ 81
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
8YQ O2 C19 SING N N 1
8YQ O2 C18 SING N N 2
8YQ C19 C20 DOUB N N 3
8YQ N C SING N N 4
8YQ C21 C18 DOUB Y N 5
8YQ C21 C22 SING Y N 6
8YQ C18 C17 SING Y N 7
8YQ C C1 SING N N 8
8YQ C20 O3 SING N N 9
8YQ C22 C15 DOUB Y N 10
8YQ C17 O3 SING N N 11
8YQ C17 C16 DOUB Y N 12
8YQ C1 C35 DOUB Y N 13
8YQ C1 C2 SING Y N 14
8YQ C35 C5 SING Y N 15
8YQ C13 C12 SING N N 16
8YQ C15 C16 SING Y N 17
8YQ C15 C14 SING N N 18
8YQ O6 C34 DOUB N N 19
8YQ C32 C31 SING N N 20
8YQ C32 C33 SING N N 21
8YQ C2 C3 DOUB Y N 22
8YQ C34 C33 SING N N 23
8YQ C34 O5 SING N N 24
8YQ O4 C31 SING N N 25
8YQ C31 N1 SING N N 26
8YQ C12 C14 DOUB Y N 27
8YQ C12 C11 SING Y N 28
8YQ C5 C6 SING N N 29
8YQ C5 C4 DOUB Y N 30
8YQ C33 C30 SING N N 31
8YQ C14 C23 SING Y N 32
8YQ C6 O SING N N 33
8YQ C3 C4 SING Y N 34
8YQ O C7 SING N N 35
8YQ C11 C10 SING N N 36
8YQ C11 C25 DOUB Y N 37
8YQ C10 O1 SING N N 38
8YQ C23 C24 DOUB Y N 39
8YQ N1 C30 SING N N 40
8YQ C8 C7 DOUB Y N 41
8YQ C8 C9 SING Y N 42
8YQ C7 C28 SING Y N 43
8YQ C30 C29 SING N N 44
8YQ O1 C9 SING N N 45
8YQ C9 C26 DOUB Y N 46
8YQ C28 C29 SING N N 47
8YQ C28 C27 DOUB Y N 48
8YQ C25 C24 SING Y N 49
8YQ C26 C27 SING Y N 50
8YQ C26 CL SING N N 51
8YQ C13 H1 SING N N 52
8YQ C13 H2 SING N N 53
8YQ C13 H3 SING N N 54
8YQ C16 H4 SING N N 55
8YQ C8 H5 SING N N 56
8YQ C10 H6 SING N N 57
8YQ C10 H7 SING N N 58
8YQ N1 H8 SING N N 59
8YQ C2 H10 SING N N 60
8YQ C3 H11 SING N N 61
8YQ C4 H12 SING N N 62
8YQ C6 H13 SING N N 63
8YQ C6 H14 SING N N 64
8YQ O5 H15 SING N N 65
8YQ N H16 SING N N 66
8YQ N H17 SING N N 67
8YQ C H19 SING N N 68
8YQ C H20 SING N N 69
8YQ O4 H21 SING N N 70
8YQ C19 H22 SING N N 71
8YQ C20 H23 SING N N 72
8YQ C21 H24 SING N N 73
8YQ C22 H25 SING N N 74
8YQ C23 H26 SING N N 75
8YQ C24 H27 SING N N 76
8YQ C25 H28 SING N N 77
8YQ C27 H29 SING N N 78
8YQ C29 H30 SING N N 79
8YQ C29 H31 SING N N 80
8YQ C30 H32 SING N N 81
8YQ C31 H33 SING N N 82
8YQ C32 H34 SING N N 83
8YQ C32 H35 SING N N 84
8YQ C33 H36 SING N N 85
8YQ C35 H37 SING N N 86
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
8YQ InChI InChI 1.03 InChI=1S/C36H35ClN2O7/c1-21-25(6-3-7-27(21)24-8-9-31-34(15-24)44-11-10-43-31)20-46-33-17-32(45-19-23-5-2-4-22(12-23)18-38)26(13-29(33)37)14-30-28(36(41)42)16-35(40)39-30/h2-13,15,17,28,30,35,39-40H,14,16,18-20,38H2,1H3,(H,41,42)/t28-,30-,35-/m1/s1
8YQ InChIKey InChI 1.03 YRYUBNOJILTDAA-GMBIYBECSA-N
8YQ SMILES_CANONICAL CACTVS 3.385 Cc1c(COc2cc(OCc3cccc(CN)c3)c(C[C@H]4N[C@H](O)C[C@H]4C(O)=O)cc2Cl)cccc1c5ccc6OC=COc6c5
8YQ SMILES CACTVS 3.385 Cc1c(COc2cc(OCc3cccc(CN)c3)c(C[CH]4N[CH](O)C[CH]4C(O)=O)cc2Cl)cccc1c5ccc6OC=COc6c5
8YQ SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 Cc1c(cccc1c2ccc3c(c2)OC=CO3)COc4cc(c(cc4Cl)C[C@@H]5[C@@H](C[C@H](N5)O)C(=O)O)OCc6cccc(c6)CN
8YQ SMILES "OpenEye OEToolkits" 2.0.6 Cc1c(cccc1c2ccc3c(c2)OC=CO3)COc4cc(c(cc4Cl)CC5C(CC(N5)O)C(=O)O)OCc6cccc(c6)CN
#
_pdbx_chem_comp_identifier.comp_id 8YQ
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.6
_pdbx_chem_comp_identifier.identifier
"(2~{R},3~{R},5~{R})-2-[[2-[[3-(aminomethyl)phenyl]methoxy]-4-[[3-(1,4-benzodioxin-6-yl)-2-methyl-phenyl]methoxy]-5-chloranyl-phenyl]methyl]-5-oxidanyl-pyrrolidine-3-carboxylic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
8YQ 'Create component' 2017-03-27 EBI
8YQ 'Other modification' 2017-03-28 EBI
8YQ 'Initial release' 2017-12-06 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
8YQ C14 C 8.753 4.841 1
8YQ C13 C 10.491 2.911 2
8YQ C15 C 9.867 5.845 3
8YQ C17 C 10.670 8.316 4
8YQ C16 C 9.556 7.312 5
8YQ C8 C 8.885 -2.031 6
8YQ C10 C 8.262 0.903 7
8YQ C9 C 10.000 -1.027 8
8YQ N1 N 13.576 -5.011 9
8YQ C12 C 9.065 3.374 10
8YQ C11 C 7.950 2.371 11
8YQ O3 O 10.322 9.839 12
8YQ C1 C 4.739 -7.513 13
8YQ C2 C 3.312 -7.050 14
8YQ C3 C 3.000 -5.582 15
8YQ C4 C 4.115 -4.579 16
8YQ C5 C 5.541 -5.042 17
8YQ C6 C 6.656 -4.038 18
8YQ C7 C 9.197 -3.498 19
8YQ O5 O 10.453 -8.376 20
8YQ N N 3.936 -9.984 21
8YQ C C 5.050 -8.980 22
8YQ O O 8.083 -4.502 23
8YQ CL Cl 12.541 -0.487 24
8YQ O1 O 9.688 0.440 25
8YQ O2 O 13.274 8.880 26
8YQ O4 O 16.216 -5.429 27
8YQ O6 O 12.554 -9.903 28
8YQ C18 C 12.097 7.853 29
8YQ C19 C 12.961 10.411 30
8YQ C20 C 11.475 10.894 31
8YQ C21 C 12.409 6.385 32
8YQ C22 C 11.294 5.382 33
8YQ C23 C 7.326 5.305 34
8YQ C24 C 6.211 4.301 35
8YQ C25 C 6.523 2.834 36
8YQ C26 C 11.427 -1.491 37
8YQ C27 C 11.739 -2.958 38
8YQ C28 C 10.624 -3.962 39
8YQ C29 C 10.936 -5.429 40
8YQ C30 C 12.362 -5.893 41
8YQ C31 C 14.789 -5.893 42
8YQ C32 C 14.326 -7.319 43
8YQ C33 C 12.826 -7.319 44
8YQ C34 C 11.944 -8.533 45
8YQ C35 C 5.853 -6.509 46
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
8YQ O2 C19 SINGLE NONE 1
8YQ O2 C18 SINGLE NONE 2
8YQ C19 C20 DOUBLE NONE 3
8YQ N C SINGLE NONE 4
8YQ C21 C18 DOUBLE NONE 5
8YQ C21 C22 SINGLE NONE 6
8YQ C18 C17 SINGLE NONE 7
8YQ C C1 SINGLE NONE 8
8YQ C20 O3 SINGLE NONE 9
8YQ C22 C15 DOUBLE NONE 10
8YQ C17 O3 SINGLE NONE 11
8YQ C17 C16 DOUBLE NONE 12
8YQ C1 C35 DOUBLE NONE 13
8YQ C1 C2 SINGLE NONE 14
8YQ C35 C5 SINGLE NONE 15
8YQ C13 C12 SINGLE NONE 16
8YQ C15 C16 SINGLE NONE 17
8YQ C15 C14 SINGLE NONE 18
8YQ O6 C34 DOUBLE NONE 19
8YQ C32 C31 SINGLE NONE 20
8YQ C32 C33 SINGLE NONE 21
8YQ C2 C3 DOUBLE NONE 22
8YQ C33 C34 SINGLE BEGINWEDGE 23
8YQ C34 O5 SINGLE NONE 24
8YQ C31 O4 SINGLE BEGINDASH 25
8YQ C31 N1 SINGLE NONE 26
8YQ C12 C14 DOUBLE NONE 27
8YQ C12 C11 SINGLE NONE 28
8YQ C5 C6 SINGLE NONE 29
8YQ C5 C4 DOUBLE NONE 30
8YQ C33 C30 SINGLE NONE 31
8YQ C14 C23 SINGLE NONE 32
8YQ C6 O SINGLE NONE 33
8YQ C3 C4 SINGLE NONE 34
8YQ O C7 SINGLE NONE 35
8YQ C11 C10 SINGLE NONE 36
8YQ C11 C25 DOUBLE NONE 37
8YQ C10 O1 SINGLE NONE 38
8YQ C23 C24 DOUBLE NONE 39
8YQ N1 C30 SINGLE NONE 40
8YQ C8 C7 DOUBLE NONE 41
8YQ C8 C9 SINGLE NONE 42
8YQ C7 C28 SINGLE NONE 43
8YQ C30 C29 SINGLE BEGINWEDGE 44
8YQ O1 C9 SINGLE NONE 45
8YQ C9 C26 DOUBLE NONE 46
8YQ C28 C29 SINGLE NONE 47
8YQ C28 C27 DOUBLE NONE 48
8YQ C25 C24 SINGLE NONE 49
8YQ C26 C27 SINGLE NONE 50
8YQ C26 CL SINGLE NONE 51
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
8YQ MurckoScaffold S1 scaffold 'C1=COc2cc(-c3cccc(COc4ccc(C[C@@H]5CCCN5)c(OCc5ccccc5)c4)c3)ccc2O1' InChI=1S/C33H31NO4/c1-2-6-24(7-3-1)22-38-32-21-30(13-11-28(32)19-29-10-5-15-34-29)37-23-25-8-4-9-26(18-25)27-12-14-31-33(20-27)36-17-16-35-31/h1-4,6-9,11-14,16-18,20-21,29,34H,5,10,15,19,22-23H2/t29-/m0/s1 VXSNTHUWTMNUOC-LJAQVGFWSA-N
8YQ phenyl F1 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
8YQ C14 S1 1
8YQ C15 S1 1
8YQ C17 S1 1
8YQ C16 S1 1
8YQ C8 S1 1
8YQ C10 S1 1
8YQ C9 S1 1
8YQ N1 S1 1
8YQ C12 S1 1
8YQ C11 S1 1
8YQ O3 S1 1
8YQ C1 S1 1
8YQ C2 S1 1
8YQ C3 S1 1
8YQ C4 S1 1
8YQ C5 S1 1
8YQ C6 S1 1
8YQ C7 S1 1
8YQ O S1 1
8YQ O1 S1 1
8YQ O2 S1 1
8YQ C18 S1 1
8YQ C19 S1 1
8YQ C20 S1 1
8YQ C21 S1 1
8YQ C22 S1 1
8YQ C23 S1 1
8YQ C24 S1 1
8YQ C25 S1 1
8YQ C26 S1 1
8YQ C27 S1 1
8YQ C28 S1 1
8YQ C29 S1 1
8YQ C30 S1 1
8YQ C31 S1 1
8YQ C32 S1 1
8YQ C33 S1 1
8YQ C35 S1 1
8YQ C14 F1 1
8YQ C12 F1 1
8YQ C11 F1 1
8YQ C25 F1 1
8YQ C24 F1 1
8YQ C23 F1 1
8YQ C15 F1 2
8YQ C22 F1 2
8YQ C21 F1 2
8YQ C18 F1 2
8YQ C17 F1 2
8YQ C16 F1 2
8YQ C8 F1 3
8YQ C7 F1 3
8YQ C28 F1 3
8YQ C27 F1 3
8YQ C26 F1 3
8YQ C9 F1 3
8YQ C1 F1 4
8YQ C35 F1 4
8YQ C5 F1 4
8YQ C4 F1 4
8YQ C3 F1 4
8YQ C2 F1 4
#
_pdbe_chem_comp_rdkit_properties.comp_id 8YQ
_pdbe_chem_comp_rdkit_properties.exactmw 642.213
_pdbe_chem_comp_rdkit_properties.amw 643.136
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 5
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 9
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 46
_pdbe_chem_comp_rdkit_properties.NumAtoms 81
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.250
_pdbe_chem_comp_rdkit_properties.NumRings 6
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 4
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 321.199
_pdbe_chem_comp_rdkit_properties.tpsa 132.500
_pdbe_chem_comp_rdkit_properties.CrippenClogP 3.595
_pdbe_chem_comp_rdkit_properties.CrippenMR 168.746
_pdbe_chem_comp_rdkit_properties.chi0v 22.886
_pdbe_chem_comp_rdkit_properties.chi1v 12.483
_pdbe_chem_comp_rdkit_properties.chi2v 5.750
_pdbe_chem_comp_rdkit_properties.chi3v 5.750
_pdbe_chem_comp_rdkit_properties.chi4v 3.682
_pdbe_chem_comp_rdkit_properties.chi0n 57.130
_pdbe_chem_comp_rdkit_properties.chi1n 29.263
_pdbe_chem_comp_rdkit_properties.chi2n 5.484
_pdbe_chem_comp_rdkit_properties.chi3n 5.484
_pdbe_chem_comp_rdkit_properties.chi4n 3.502
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.540
_pdbe_chem_comp_rdkit_properties.kappa1 10.228
_pdbe_chem_comp_rdkit_properties.kappa2 13.844
_pdbe_chem_comp_rdkit_properties.kappa3 6.978
_pdbe_chem_comp_rdkit_properties.Phi 3.078
#
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
8YQ C14 4.841 1.819 -0.310 ETKDGv3 1
8YQ C13 3.342 -0.113 -0.858 ETKDGv3 2
8YQ C15 6.054 0.985 -0.473 ETKDGv3 3
8YQ C17 8.177 0.619 -1.627 ETKDGv3 4
8YQ C16 7.066 1.354 -1.495 ETKDGv3 5
8YQ C8 -1.555 0.179 0.113 ETKDGv3 6
8YQ C10 0.993 1.711 -0.215 ETKDGv3 7
8YQ C9 -0.312 -0.126 0.869 ETKDGv3 8
8YQ N1 -4.030 -2.989 -1.048 ETKDGv3 9
8YQ C12 3.580 1.328 -0.455 ETKDGv3 10
8YQ C11 2.409 2.229 -0.174 ETKDGv3 11
8YQ O3 9.149 0.929 -2.581 ETKDGv3 12
8YQ C1 -4.850 3.362 1.662 ETKDGv3 13
8YQ C2 -4.052 4.527 1.209 ETKDGv3 14
8YQ C3 -3.356 4.464 0.068 ETKDGv3 15
8YQ C4 -3.378 3.234 -0.748 ETKDGv3 16
8YQ C5 -4.094 2.168 -0.347 ETKDGv3 17
8YQ C6 -4.127 0.906 -1.167 ETKDGv3 18
8YQ C7 -2.673 -0.551 0.298 ETKDGv3 19
8YQ O5 -1.418 -5.316 1.755 ETKDGv3 20
8YQ N -7.012 3.956 2.641 ETKDGv3 21
8YQ C -5.668 3.459 2.924 ETKDGv3 22
8YQ O -3.886 -0.237 -0.343 ETKDGv3 23
8YQ CL 1.134 -1.538 2.662 ETKDGv3 24
8YQ O1 0.859 0.626 0.699 ETKDGv3 25
8YQ O2 9.580 -1.284 -0.940 ETKDGv3 26
8YQ O4 -4.822 -4.245 -2.912 ETKDGv3 27
8YQ O6 -1.162 -4.141 -0.200 ETKDGv3 28
8YQ C18 8.405 -0.550 -0.759 ETKDGv3 29
8YQ C19 10.516 -0.917 -1.920 ETKDGv3 30
8YQ C20 10.309 0.148 -2.710 ETKDGv3 31
8YQ C21 7.506 -0.885 0.173 ETKDGv3 32
8YQ C22 6.278 -0.076 0.329 ETKDGv3 33
8YQ C23 5.040 3.251 0.015 ETKDGv3 34
8YQ C24 3.995 4.053 0.218 ETKDGv3 35
8YQ C25 2.627 3.520 0.133 ETKDGv3 36
8YQ C26 -0.312 -1.141 1.744 ETKDGv3 37
8YQ C27 -1.527 -1.955 1.941 ETKDGv3 38
8YQ C28 -2.641 -1.716 1.227 ETKDGv3 39
8YQ C29 -3.873 -2.576 1.428 ETKDGv3 40
8YQ C30 -4.182 -3.577 0.283 ETKDGv3 41
8YQ C31 -3.783 -4.109 -1.972 ETKDGv3 42
8YQ C32 -3.602 -5.389 -1.145 ETKDGv3 43
8YQ C33 -3.400 -4.898 0.281 ETKDGv3 44
8YQ C34 -1.931 -4.756 0.589 ETKDGv3 45
8YQ C35 -4.881 2.249 0.908 ETKDGv3 46
8YQ H1 4.155 -0.496 -1.509 ETKDGv3 47
8YQ H2 2.410 -0.219 -1.447 ETKDGv3 48
8YQ H3 3.269 -0.747 0.050 ETKDGv3 49
8YQ H4 6.905 2.211 -2.138 ETKDGv3 50
8YQ H5 -1.554 1.010 -0.574 ETKDGv3 51
8YQ H6 0.262 2.504 0.057 ETKDGv3 52
8YQ H7 0.759 1.374 -1.248 ETKDGv3 53
8YQ H8 -4.912 -2.485 -1.303 ETKDGv3 54
8YQ H10 -4.033 5.435 1.799 ETKDGv3 55
8YQ H11 -2.774 5.316 -0.260 ETKDGv3 56
8YQ H12 -2.803 3.204 -1.665 ETKDGv3 57
8YQ H13 -3.397 0.926 -2.006 ETKDGv3 58
8YQ H14 -5.138 0.808 -1.614 ETKDGv3 59
8YQ H15 -0.435 -5.230 1.983 ETKDGv3 60
8YQ H16 -6.935 4.891 2.178 ETKDGv3 61
8YQ H17 -7.477 3.305 1.967 ETKDGv3 62
8YQ H19 -5.739 2.465 3.418 ETKDGv3 63
8YQ H20 -5.170 4.144 3.645 ETKDGv3 64
8YQ H21 -5.667 -4.381 -2.408 ETKDGv3 65
8YQ H22 11.417 -1.505 -2.037 ETKDGv3 66
8YQ H23 11.044 0.412 -3.458 ETKDGv3 67
8YQ H24 7.674 -1.742 0.813 ETKDGv3 68
8YQ H25 5.568 -0.344 1.102 ETKDGv3 69
8YQ H26 6.042 3.653 0.098 ETKDGv3 70
8YQ H27 4.151 5.096 0.460 ETKDGv3 71
8YQ H28 1.802 4.193 0.336 ETKDGv3 72
8YQ H29 -1.498 -2.761 2.663 ETKDGv3 73
8YQ H30 -3.811 -3.137 2.386 ETKDGv3 74
8YQ H31 -4.745 -1.895 1.539 ETKDGv3 75
8YQ H32 -5.255 -3.861 0.414 ETKDGv3 76
8YQ H33 -2.841 -3.900 -2.522 ETKDGv3 77
8YQ H34 -4.521 -6.016 -1.186 ETKDGv3 78
8YQ H35 -2.751 -6.002 -1.519 ETKDGv3 79
8YQ H36 -3.852 -5.615 1.002 ETKDGv3 80
8YQ H37 -5.480 1.400 1.214 ETKDGv3 81
#