Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8PT    

Bonds between two atoms of the molecule

Total Number of Bonds: 63


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N9 C8 N C doub 1.3 N Y
2 N9 C4 N C sing 1.35 N Y
3 C8 N7 C N sing 1.35 N Y
4 C4 N3 C N doub 1.34 N Y
5 C4 C5 C C sing 1.4 N Y
6 N3 C2 N C sing 1.32 N Y
7 N7 C5 N C sing 1.38 N Y
8 C5 C6 C C doub 1.4 N Y
9 C2 N2 C N sing 1.39 N N
10 C2 N1 C N doub 1.33 N Y
11 N2 CAM N C sing 1.4 N N
12 C6 N1 C N sing 1.33 N Y
13 C6 N6 C N sing 1.38 N N
14 CAS CAR C C sing 1.51 N N
15 CAM CAR C C doub 1.39 N Y
16 CAM CAN C C sing 1.39 N Y
17 N6 CAK N C sing 1.46 N N
18 CAK CAY C C sing 1.53 N N
19 CAK CAU C C sing 1.53 N N
20 CAR CAQ C C sing 1.38 N Y
21 CAN CAO C C doub 1.38 N Y
22 CAY CAX C C sing 1.53 N N
23 CAU CAV C C sing 1.53 N N
24 CAQ CAP C C doub 1.39 N Y
25 CAX CAW C C sing 1.53 N N
26 CAO CAP C C sing 1.39 N Y
27 CAP NAT C N sing 1.4 N N
28 CAV CAW C C sing 1.53 N N
29 NAT CAZ N C sing 1.47 N N
30 NAT CBD N C sing 1.47 N N
31 CAZ CBA C C sing 1.53 N N
32 CBD CBC C C sing 1.53 N N
33 CBA OBB C O sing 1.43 N N
34 CBC OBB C O sing 1.43 N N
35 C8 H1 C H sing 1.08 N N
36 CAU H2 C H sing 1.09 N N
37 CAV H3 C H sing 1.09 N N
38 CAW H4 C H sing 1.09 N N
39 CAW H5 C H sing 1.09 N N
40 CAX H6 C H sing 1.09 N N
41 CAX H7 C H sing 1.09 N N
42 CAY H8 C H sing 1.09 N N
43 CAY H9 C H sing 1.09 N N
44 CAK H10 C H sing 1.09 N N
45 N6 H11 N H sing 0.97 N N
46 N7 H12 N H sing 0.97 N N
47 N2 H14 N H sing 0.97 N N
48 CAS H15 C H sing 1.09 N N
49 CAS H16 C H sing 1.09 N N
50 CAS H17 C H sing 1.09 N N
51 CAQ H18 C H sing 1.08 N N
52 CAN H19 C H sing 1.08 N N
53 CAO H20 C H sing 1.08 N N
54 CAZ H21 C H sing 1.09 N N
55 CAZ H22 C H sing 1.09 N N
56 CBA H23 C H sing 1.09 N N
57 CBA H24 C H sing 1.09 N N
58 CBC H25 C H sing 1.09 N N
59 CBC H26 C H sing 1.09 N N
60 CBD H27 C H sing 1.09 N N
61 CBD H28 C H sing 1.09 N N
62 CAU H13 C H sing 1.09 N N
63 CAV H29 C H sing 1.09 N N