Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 8PT

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 59


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C4 C C1 N Y N 0 1.199 2.385 -0.299
2 C5 C C2 N Y N 0 2.585 2.243 -0.127
3 C6 C C3 N Y N 0 3.11 0.963 0.067
4 C8 C C4 N Y N 0 2.08 4.364 -0.406
5 C2 C C5 N Y N 0 0.97 0.098 -0.086
6 CAU C C6 N N N 0 5.238 -1.238 -0.914
7 CAV C C7 N N N 0 5.796 -2.647 -0.703
8 CAW C C8 N N N 0 7.121 -2.562 0.056
9 CAX C C9 N N N 0 6.889 -1.896 1.414
10 CAY C C10 N N N 0 6.331 -0.488 1.203
11 CAK C C11 N N N 0 5.006 -0.572 0.444
12 N6 N N1 N N N 0 4.471 0.776 0.242
13 N1 N N2 N Y N 0 2.276 -0.072 0.08
14 N7 N N3 N Y N 0 3.113 3.516 -0.2
15 N9 N N4 N Y N 0 0.959 3.701 -0.459
16 N3 N N5 N Y N 0 0.431 1.291 -0.273
17 N2 N N6 N N N 0 0.142 -1.014 -0.064
18 CAM C C12 N Y N 0 -1.249 -0.852 -0.113
19 CAR C C13 N Y N 0 -2.05 -1.877 -0.599
20 CAS C C14 N N N 0 -1.423 -3.163 -1.074
21 CAQ C C15 N Y N 0 -3.421 -1.718 -0.646
22 CAN C C16 N Y N 0 -1.827 0.331 0.33
23 CAO C C17 N Y N 0 -3.197 0.489 0.282
24 CAP C C18 N Y N 0 -3.998 -0.534 -0.208
25 NAT N N7 N N N 0 -5.388 -0.373 -0.256
26 CAZ C C19 N N N 0 -5.783 0.948 0.253
27 CBA C C20 N N N 0 -7.301 1.105 0.127
28 OBB O O1 N N N 0 -7.944 0.039 0.831
29 CBC C C21 N N N 0 -7.583 -1.262 0.361
30 CBD C C22 N N N 0 -6.068 -1.443 0.489
31 H1 H H1 N N N 0 2.17 5.436 -0.507
32 H2 H H2 N N N 0 5.95 -0.648 -1.491
33 H3 H H3 N N N 0 5.084 -3.237 -0.127
34 H4 H H4 N N N 0 7.519 -3.565 0.206
35 H5 H H5 N N N 0 7.833 -1.972 -0.521
36 H6 H H6 N N N 0 6.177 -2.487 1.991
37 H7 H H7 N N N 0 7.834 -1.836 1.955
38 H8 H H8 N N N 0 6.166 -0.014 2.171
39 H9 H H9 N N N 0 7.043 0.103 0.626
40 H10 H H10 N N N 0 4.294 -1.163 1.021
41 H11 H H11 N N N 0 5.071 1.539 0.23
42 H12 H H12 N N N 0 4.049 3.757 -0.121
43 H14 H H14 N N N 0 0.525 -1.903 -0.015
44 H15 H H15 N N N 0 -1.35 -3.861 -0.24
45 H16 H H16 N N N 0 -2.04 -3.599 -1.86
46 H17 H H17 N N N 0 -0.427 -2.958 -1.465
47 H18 H H18 N N N 0 -4.044 -2.515 -1.024
48 H19 H H19 N N N 0 -1.204 1.126 0.712
49 H20 H H20 N N N 0 -3.646 1.409 0.627
50 H21 H H21 N N N 0 -5.493 1.037 1.3
51 H22 H H22 N N N 0 -5.288 1.726 -0.329
52 H23 H H23 N N N 0 -7.605 2.06 0.555
53 H24 H H24 N N N 0 -7.584 1.07 -0.925
54 H25 H H25 N N N 0 -8.091 -2.019 0.958
55 H26 H H26 N N N 0 -7.875 -1.366 -0.684
56 H27 H H27 N N N 0 -5.781 -2.411 0.079
57 H28 H H28 N N N 0 -5.783 -1.392 1.54
58 H13 H H13 N N N 0 4.293 -1.298 -1.455
59 H29 H H29 N N N 0 5.961 -3.121 -1.671