Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 8JM    

Bonds between two atoms of the molecule

Total Number of Bonds: 46


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C13 C14 C C doub 1.38 N Y
2 C13 C12 C C sing 1.39 N Y
3 C14 C9 C C sing 1.39 N Y
4 O15 C12 O C sing 1.36 N N
5 N16 C7 N C sing 1.39 N N
6 C12 C11 C C doub 1.39 N Y
7 C7 N6 C N doub 1.32 N Y
8 C7 C8 C C sing 1.4 N Y
9 C9 C8 C C sing 1.48 N N
10 C9 C10 C C doub 1.39 N Y
11 N6 C5 N C sing 1.32 N Y
12 C8 C3 C C doub 1.39 N Y
13 C11 C10 C C sing 1.38 N Y
14 C5 C4 C C doub 1.39 N Y
15 C3 C4 C C sing 1.4 N Y
16 C3 C2 C C sing 1.51 N N
17 C4 C17 C C sing 1.48 N N
18 C18 C17 C C doub 1.4 N Y
19 C18 C19 C C sing 1.36 N Y
20 C2 C1 C C sing 1.53 N N
21 C17 C22 C C sing 1.39 N Y
22 C19 C20 C C doub 1.39 N Y
23 C22 C21 C C doub 1.4 N Y
24 C20 C21 C C sing 1.41 N Y
25 C20 N25 C N sing 1.37 N Y
26 C21 C23 C C sing 1.46 N Y
27 N25 N24 N N sing 1.4 N Y
28 C23 N24 C N doub 1.3 N Y
29 C2 H1 C H sing 1.09 N N
30 C2 H2 C H sing 1.09 N N
31 C10 H3 C H sing 1.08 N N
32 C1 H4 C H sing 1.09 N N
33 C1 H5 C H sing 1.09 N N
34 C1 H6 C H sing 1.09 N N
35 C5 H7 C H sing 1.08 N N
36 C11 H8 C H sing 1.08 N N
37 C13 H9 C H sing 1.08 N N
38 C14 H10 C H sing 1.08 N N
39 O15 H11 O H sing 0.97 N N
40 N16 H12 N H sing 0.97 N N
41 N16 H13 N H sing 0.97 N N
42 C18 H14 C H sing 1.08 N N
43 C19 H15 C H sing 1.08 N N
44 C22 H16 C H sing 1.08 N N
45 C23 H17 C H sing 1.08 N N
46 N25 H26 N H sing 0.97 N N