Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Atoms of Molecule

 Molecule : 8JM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C7 C C1 N Y N 0 1.629 -2.292 0.16
2 C9 C C2 N Y N 0 2.874 -0.121 0.034
3 C2 C C3 N N N 0 0.314 1.274 0.15
4 C10 C C4 N Y N 0 3.649 -0.19 -1.123
5 C4 C C5 N Y N 0 -0.779 -1.001 0.27
6 C1 C C6 N N N 0 0.069 1.742 -1.286
7 C3 C C7 N Y N 0 0.384 -0.231 0.183
8 C5 C C8 N Y N 0 -0.674 -2.389 0.298
9 N6 N N1 N Y N 0 0.502 -2.982 0.243
10 C8 C C9 N Y N 0 1.609 -0.89 0.127
11 C11 C C10 N Y N 0 4.825 0.526 -1.207
12 C12 C C11 N Y N 0 5.237 1.314 -0.141
13 C13 C C12 N Y N 0 4.467 1.385 1.012
14 C14 C C13 N Y N 0 3.294 0.666 1.105
15 O15 O O1 N N N 0 6.396 2.018 -0.226
16 N16 N N2 N N N 0 2.843 -2.964 0.111
17 C17 C C14 N Y N 0 -2.109 -0.347 0.333
18 C18 C C15 N Y N 0 -2.378 0.595 1.334
19 C19 C C16 N Y N 0 -3.594 1.206 1.407
20 C20 C C17 N Y N 0 -4.589 0.898 0.481
21 C21 C C18 N Y N 0 -4.332 -0.048 -0.532
22 C22 C C19 N Y N 0 -3.081 -0.666 -0.603
23 C23 C C20 N Y N 0 -5.555 -0.143 -1.324
24 N24 N N3 N Y N 0 -6.427 0.675 -0.808
25 N25 N N4 N Y N 0 -5.877 1.331 0.297
26 H1 H H1 N N N 0 1.254 1.69 0.513
27 H2 H H2 N N N 0 -0.503 1.614 0.787
28 H3 H H3 N N N 0 3.33 -0.803 -1.952
29 H4 H H4 N N N 0 0.838 1.329 -1.938
30 H5 H H5 N N N 0 -0.911 1.4 -1.617
31 H6 H H6 N N N 0 0.106 2.831 -1.324
32 H7 H H7 N N N 0 -1.569 -2.989 0.365
33 H8 H H8 N N N 0 5.426 0.473 -2.103
34 H9 H H9 N N N 0 4.793 1.995 1.842
35 H10 H H10 N N N 0 2.695 0.721 2.002
36 H11 H H11 N N N 0 6.29 2.909 -0.588
37 H12 H H12 N N N 0 2.862 -3.933 0.137
38 H13 H H13 N N N 0 3.671 -2.463 0.05
39 H14 H H14 N N N 0 -1.613 0.839 2.056
40 H15 H H15 N N N 0 -3.788 1.93 2.184
41 H16 H H16 N N N 0 -2.874 -1.389 -1.378
42 H17 H H17 N N N 0 -5.708 -0.778 -2.184
43 H26 H H18 N N N 0 -6.333 1.988 0.846