Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8JM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 43


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C6 N N N 0 0.069 1.742 -1.286
2 C10 C C4 N Y N 0 3.649 -0.19 -1.123
3 C11 C C10 N Y N 0 4.825 0.526 -1.207
4 C12 C C11 N Y N 0 5.237 1.314 -0.141
5 C13 C C12 N Y N 0 4.467 1.385 1.012
6 C14 C C13 N Y N 0 3.294 0.666 1.105
7 C17 C C14 N Y N 0 -2.109 -0.347 0.333
8 C18 C C15 N Y N 0 -2.378 0.595 1.334
9 C19 C C16 N Y N 0 -3.594 1.206 1.407
10 C2 C C3 N N N 0 0.314 1.274 0.15
11 C20 C C17 N Y N 0 -4.589 0.898 0.481
12 C21 C C18 N Y N 0 -4.332 -0.048 -0.532
13 C22 C C19 N Y N 0 -3.081 -0.666 -0.603
14 C23 C C20 N Y N 0 -5.555 -0.143 -1.324
15 C3 C C7 N Y N 0 0.384 -0.231 0.183
16 C4 C C5 N Y N 0 -0.779 -1.001 0.27
17 C5 C C8 N Y N 0 -0.674 -2.389 0.298
18 C7 C C1 N Y N 0 1.629 -2.292 0.16
19 C8 C C9 N Y N 0 1.609 -0.89 0.127
20 C9 C C2 N Y N 0 2.874 -0.121 0.034
21 H1 H H1 N N N 0 1.254 1.69 0.513
22 H10 H H10 N N N 0 2.695 0.721 2.002
23 H11 H H11 N N N 0 6.29 2.909 -0.588
24 H12 H H12 N N N 0 2.862 -3.933 0.137
25 H13 H H13 N N N 0 3.671 -2.463 0.05
26 H14 H H14 N N N 0 -1.613 0.839 2.056
27 H15 H H15 N N N 0 -3.788 1.93 2.184
28 H16 H H16 N N N 0 -2.874 -1.389 -1.378
29 H17 H H17 N N N 0 -5.708 -0.778 -2.184
30 H2 H H2 N N N 0 -0.503 1.614 0.787
31 H26 H H18 N N N 0 -6.333 1.988 0.846
32 H3 H H3 N N N 0 3.33 -0.803 -1.952
33 H4 H H4 N N N 0 0.838 1.329 -1.938
34 H5 H H5 N N N 0 -0.911 1.4 -1.617
35 H6 H H6 N N N 0 0.106 2.831 -1.324
36 H7 H H7 N N N 0 -1.569 -2.989 0.365
37 H8 H H8 N N N 0 5.426 0.473 -2.103
38 H9 H H9 N N N 0 4.793 1.995 1.842
39 N16 N N2 N N N 0 2.843 -2.964 0.111
40 N24 N N3 N Y N 0 -6.427 0.675 -0.808
41 N25 N N4 N Y N 0 -5.877 1.331 0.297
42 N6 N N1 N Y N 0 0.502 -2.982 0.243
43 O15 O O1 N N N 0 6.396 2.018 -0.226