Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 8CX    

Bonds between two atoms of the molecule

Total Number of Bonds: 58


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2 C1 C C sing 1.53 N N
2 C1 O1 C O sing 1.43 N N
3 C1 H1 C H sing 1.09 N N
4 C1 H1A C H sing 1.09 N N
5 O1 C3' O C sing 1.43 N N
6 C2 N2 C N sing 1.47 N N
7 C2 H2 C H sing 1.09 N N
8 C2 H2A C H sing 1.09 N N
9 C3 N2 C N sing 1.47 N N
10 N2 HN2 N H sing 1.01 N N
11 C3 C4 C C sing 1.53 N N
12 C3 H3 C H sing 1.09 N N
13 C3 H3A C H sing 1.09 N N
14 C11 C4 C C sing 1.51 N N
15 C4 F5 C F sing 1.4 N N
16 C4 H4 C H sing 1.09 N N
17 C2' N1' C N sing 1.49 N N
18 C5' N1' C N sing 1.49 N N
19 N1' HN1' N H sing 1.01 N N
20 C12 C11 C C doub 1.38 N Y
21 C11 C16 C C sing 1.38 N Y
22 C13 C12 C C sing 1.38 N Y
23 C12 H12 C H sing 1.08 N N
24 F13 C13 F C sing 1.35 N N
25 C13 C14 C C doub 1.38 N Y
26 C14 C15 C C sing 1.38 N Y
27 C14 H14 C H sing 1.08 N N
28 C15 C16 C C doub 1.38 N Y
29 C15 H15 C H sing 1.08 N N
30 C16 H16 C H sing 1.08 N N
31 N1A C2A N C doub 1.32 N Y
32 N1A C6A N C sing 1.32 N Y
33 C3' C2' C C sing 1.54 N N
34 C2' H2' C H sing 1.09 N N
35 C2' H2'A C H sing 1.09 N N
36 C7A C2A C C sing 1.51 N N
37 C2A C3A C C sing 1.38 N Y
38 C3' C4' C C sing 1.54 N N
39 C3' H3' C H sing 1.09 N N
40 C3A C4A C C doub 1.39 N Y
41 C3A H3AA C H sing 1.08 N N
42 C7A C4' C C sing 1.53 N N
43 C4' C5' C C sing 1.54 N N
44 C4' H4' C H sing 1.09 N N
45 C5A C4A C C sing 1.38 N Y
46 C4A C8A C C sing 1.51 N N
47 C5' H5' C H sing 1.09 N N
48 C5' H5'A C H sing 1.09 N N
49 C6A C5A C C doub 1.39 N Y
50 C5A H5A C H sing 1.08 N N
51 N6A C6A N C sing 1.39 N N
52 N6A HN6A N H sing 0.97 N N
53 N6A HN6B N H sing 0.97 N N
54 C7A H7A C H sing 1.09 N N
55 C7A H7AA C H sing 1.09 N N
56 C8A H8A C H sing 1.09 N N
57 C8A H8AA C H sing 1.09 N N
58 C8A H8AB C H sing 1.09 N N