Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 8CX

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 56


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C1 C C1 N N N 0 -0.037 2.803 1.401
2 O1 O O1 N N N 0 -0.918 1.994 0.619
3 C2 C C2 N N N 0 1.242 2.019 1.702
4 N2 N N2 N N N 0 1.963 1.758 0.449
5 C3 C C3 N N N 0 3.2 1.006 0.7
6 C4 C C4 R N N 0 3.921 0.755 -0.625
7 F5 F F5 N N N 0 3.091 0.017 -1.476
8 N1' N N1' N N N 0 -3.339 3.166 -1.731
9 C11 C C11 N Y N 0 5.19 -0.017 -0.368
10 C12 C C12 N Y N 0 5.126 -1.308 0.121
11 C13 C C13 N Y N 0 6.291 -2.017 0.356
12 F13 F F13 N N N 0 6.23 -3.28 0.834
13 C14 C C14 N Y N 0 7.52 -1.432 0.102
14 C15 C C15 N Y N 0 7.582 -0.141 -0.387
15 C3A C C3A N Y N 0 -3.738 -1.875 -0.695
16 C16 C C16 N Y N 0 6.417 0.564 -0.627
17 N1A N N1A N Y N 0 -4.891 -0.684 0.969
18 C2' C C2' N N N 0 -2.021 3.362 -1.074
19 C2A C C2A N Y N 0 -3.831 -0.824 0.196
20 C3' C C3' R N N 0 -2.15 2.635 0.281
21 C4' C C4' R N N 0 -3.26 1.586 0.07
22 C4A C C4A N Y N 0 -4.777 -2.793 -0.774
23 C5' C C5' N N N 0 -3.709 1.767 -1.396
24 C5A C C5A N Y N 0 -5.875 -2.62 0.05
25 C6A C C6A N Y N 0 -5.901 -1.538 0.924
26 N6A N N6A N N N 0 -6.998 -1.353 1.757
27 C7A C C7A N N N 0 -2.707 0.176 0.286
28 C8A C C8A N N N 0 -4.709 -3.952 -1.735
29 H1 H H1 N N N 0 0.213 3.708 0.848
30 H1A H H1A N N N 0 -0.526 3.073 2.337
31 H2 H H2 N N N 0 1.875 2.601 2.372
32 H2A H H2A N N N 0 0.985 1.072 2.177
33 HN2 H HN2 N N N 0 1.374 1.276 -0.213
34 H3 H H3 N N N 0 3.847 1.581 1.363
35 H3A H H3A N N N 0 2.956 0.052 1.168
36 H4 H H4 N N N 0 4.165 1.709 -1.093
37 HN1' H HN1' N N N 0 -4.022 3.816 -1.372
38 H12 H H12 N N N 0 4.167 -1.763 0.319
39 H14 H H14 N N N 0 8.43 -1.984 0.286
40 H15 H H15 N N N 0 8.54 0.316 -0.586
41 H16 H H16 N N N 0 6.466 1.572 -1.013
42 H2' H H2' N N N 0 -1.228 2.914 -1.673
43 H2'A H H2'A N N N 0 -1.827 4.424 -0.922
44 H3' H H3' N N N 0 -2.436 3.339 1.063
45 H3AA H H3AA N N N 0 -2.867 -1.981 -1.324
46 H4' H H4' N N N 0 -4.093 1.774 0.747
47 H5' H H5' N N N 0 -4.787 1.627 -1.484
48 H5'A H H5'A N N N 0 -3.18 1.068 -2.045
49 HN6A H HN6A N N N 0 -7.021 -0.599 2.368
50 H5A H H5A N N N 0 -6.7 -3.316 0.015
51 HN6B H HN6B N N N 0 -7.741 -1.976 1.727
52 H7A H H7A N N N 0 -2.244 0.114 1.271
53 H7AA H H7AA N N N 0 -1.963 -0.044 -0.48
54 H8A H H8A N N N 0 -4.241 -4.805 -1.243
55 H8AA H H8AA N N N 0 -5.717 -4.222 -2.049
56 H8AB H H8AB N N N 0 -4.121 -3.667 -2.607