Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 6PE    

Bonds between two atoms of the molecule

Total Number of Bonds: 59


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O1 P1 O P sing 1.55 N N
2 O2 P1 O P doub 1.54 N N
3 P1 O3 P O sing 1.61 N N
4 P1 O8 P O sing 1.61 N N
5 O3 C1 O C sing 1.43 N N
6 C1 C2 C C sing 1.53 N N
7 C1 H1 C H sing 1.09 N N
8 C1 H2 C H sing 1.09 N N
9 C2 C3 C C sing 1.53 N N
10 C2 O6 C O sing 1.45 N N
11 C2 H3 C H sing 1.09 N N
12 C3 O4 C O sing 1.45 N N
13 C3 H4 C H sing 1.09 N N
14 C3 H5 C H sing 1.09 N N
15 O4 C4 O C sing 1.34 N N
16 C4 O5 C O doub 1.21 N N
17 C4 C5 C C sing 1.51 N N
18 C5 C6 C C sing 1.53 N N
19 C5 H6 C H sing 1.09 N N
20 C5 H7 C H sing 1.09 N N
21 C6 C7 C C sing 1.53 N N
22 C6 H8 C H sing 1.09 N N
23 C6 H9 C H sing 1.09 N N
24 C7 C8 C C sing 1.53 N N
25 C7 H10 C H sing 1.09 N N
26 C7 H11 C H sing 1.09 N N
27 C8 C9 C C sing 1.53 N N
28 C8 H12 C H sing 1.09 N N
29 C8 H13 C H sing 1.09 N N
30 C9 H14 C H sing 1.09 N N
31 C9 H15 C H sing 1.09 N N
32 C9 H16 C H sing 1.09 N N
33 O6 C10 O C sing 1.34 N N
34 C10 O7 C O doub 1.21 N N
35 C10 C11 C C sing 1.51 N N
36 C11 C12 C C sing 1.53 N N
37 C11 H17 C H sing 1.09 N N
38 C11 H18 C H sing 1.09 N N
39 C12 C13 C C sing 1.53 N N
40 C12 H19 C H sing 1.09 N N
41 C12 H20 C H sing 1.09 N N
42 C13 C14 C C sing 1.53 N N
43 C13 H21 C H sing 1.09 N N
44 C13 H22 C H sing 1.09 N N
45 C14 C15 C C sing 1.53 N N
46 C14 H23 C H sing 1.09 N N
47 C14 H24 C H sing 1.09 N N
48 C15 H25 C H sing 1.09 N N
49 C15 H26 C H sing 1.09 N N
50 C15 H27 C H sing 1.09 N N
51 O8 C16 O C sing 1.43 N N
52 C16 C17 C C sing 1.53 N N
53 C16 H28 C H sing 1.09 N N
54 C16 H29 C H sing 1.09 N N
55 C17 N1 C N sing 1.47 N N
56 C17 H30 C H sing 1.09 N N
57 C17 H31 C H sing 1.09 N N
58 N1 H32 N H sing 1.01 N N
59 N1 H33 N H sing 1.01 N N