Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 6PE

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 60


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O1 O O1 N N N -1 -0.639 3.387 -0.421
2 O2 O O2 N N N 0 1.368 2.879 -1.864
3 P1 P P1 N N N 0 0.605 2.484 -0.58
4 O3 O O3 N N N 0 0.142 0.946 -0.682
5 C1 C C1 N N N 0 -0.799 0.868 -1.755
6 C2 C C2 R N N 0 -1.281 -0.576 -1.907
7 C3 C C3 N N N 0 -0.075 -1.5 -2.085
8 O4 O O4 N N N 0 0.847 -1.311 -0.98
9 C4 C C4 N N N 0 1.984 -2.022 -0.926
10 O5 O O5 N N N 0 2.24 -2.82 -1.797
11 C5 C C5 N N N 0 2.942 -1.826 0.221
12 C6 C C6 N N N 0 4.148 -2.75 0.043
13 C7 C C7 N N N 0 5.12 -2.551 1.208
14 C8 C C8 N N N 0 6.326 -3.476 1.029
15 C9 C C9 N N N 0 7.298 -3.276 2.194
16 O6 O O6 N N N 0 -2.019 -0.967 -0.719
17 C10 C C10 N N N 0 -3.345 -0.768 -0.657
18 O7 O O7 N N N 0 -3.925 -0.263 -1.59
19 C11 C C11 N N N 0 -4.111 -1.174 0.575
20 C12 C C12 N N N 0 -5.593 -0.839 0.388
21 C13 C C13 N N N 0 -6.371 -1.251 1.64
22 C14 C C14 N N N 0 -7.852 -0.917 1.453
23 C15 C C15 N N N 0 -8.63 -1.329 2.704
24 O8 O O8 N N N 0 1.57 2.671 0.696
25 C16 C C16 N N N 0 1.849 4.068 0.801
26 C17 C C17 N N N 0 2.767 4.315 2.001
27 N1 N N1 N N N 0 4.067 3.676 1.762
28 H1 H H1 N N N 0 -0.322 1.191 -2.681
29 H2 H H2 N N N 0 -1.65 1.515 -1.54
30 H3 H H3 N N N 0 -1.93 -0.652 -2.779
31 H4 H H4 N N N 0 0.428 -1.264 -3.023
32 H5 H H5 N N N 0 -0.412 -2.537 -2.104
33 H6 H H6 N N N 0 2.439 -2.062 1.159
34 H7 H H7 N N N 0 3.278 -0.789 0.24
35 H8 H H8 N N N 0 4.651 -2.514 -0.895
36 H9 H H9 N N N 0 3.811 -3.787 0.024
37 H10 H H10 N N N 0 4.617 -2.787 2.145
38 H11 H H11 N N N 0 5.456 -1.515 1.227
39 H12 H H12 N N N 0 6.829 -3.24 0.092
40 H13 H H13 N N N 0 5.989 -4.512 1.01
41 H14 H H14 N N N 0 7.634 -2.24 2.213
42 H15 H H15 N N N 0 6.795 -3.512 3.131
43 H16 H H16 N N N 0 8.157 -3.935 2.067
44 H17 H H17 N N N 0 -3.999 -2.246 0.737
45 H18 H H18 N N N 0 -3.723 -0.633 1.439
46 H19 H H19 N N N 0 -5.706 0.233 0.227
47 H20 H H20 N N N 0 -5.981 -1.38 -0.475
48 H21 H H21 N N N 0 -6.258 -2.323 1.801
49 H22 H H22 N N N 0 -5.982 -0.711 2.503
50 H23 H H23 N N N 0 -7.965 0.155 1.291
51 H24 H H24 N N N 0 -8.24 -1.457 0.589
52 H25 H H25 N N N 0 -8.517 -2.401 2.866
53 H26 H H26 N N N 0 -8.241 -0.789 3.568
54 H27 H H27 N N N 0 -9.685 -1.091 2.571
55 H28 H H28 N N N 0 2.341 4.41 -0.109
56 H29 H H29 N N N 0 0.917 4.616 0.938
57 H30 H H30 N N N 0 2.908 5.388 2.135
58 H31 H H31 N N N 0 2.313 3.894 2.898
59 H32 H H32 N N N 0 4.636 3.864 2.574
60 H33 H H33 N N N 0 3.903 2.68 1.748