Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 6MZ    

Bonds between two atoms of the molecule

Total Number of Bonds: 42


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C4 C5 C C sing 1.41 N Y
2 C4 N9 C N sing 1.37 N Y
3 C2 N3 C N sing 1.32 N Y
4 C4 N3 C N doub 1.33 N Y
5 C2 N1 C N doub 1.32 N Y
6 C5 C6 C C doub 1.4 N Y
7 N1 C6 N C sing 1.33 N Y
8 C6 N6 C N sing 1.38 N N
9 N6 C9 N C sing 1.46 N N
10 C5 N7 C N sing 1.35 N Y
11 N9 C8 N C sing 1.36 N Y
12 N7 C8 N C doub 1.3 N Y
13 O5' C5' O C sing 1.43 N N
14 C1' H1' C H sing 1.09 N N
15 C9 H9C1 C H sing 1.09 N N
16 C9 H9C2 C H sing 1.09 N N
17 C5' H5'1 C H sing 1.09 N N
18 C5' H5'2 C H sing 1.09 N N
19 C4' H4' C H sing 1.09 N N
20 C3' H3' C H sing 1.09 N N
21 C2' H2' C H sing 1.09 N N
22 O2' HA O H sing 0.97 N N
23 O3' HB O H sing 0.97 N N
24 O3P H3P O H sing 0.97 N N
25 C5' C4' C C sing 1.53 N N
26 C4' O4' C O sing 1.44 N N
27 N9 C1' N C sing 1.46 N N
28 O4' C1' O C sing 1.44 N N
29 C1' C2' C C sing 1.55 N N
30 C2' O2' C O sing 1.43 N N
31 C4' C3' C C sing 1.54 N N
32 C2' C3' C C sing 1.55 N N
33 C3' O3' C O sing 1.43 N N
34 O1P P O P sing 1.61 N N
35 O2P P O P doub 1.48 N N
36 O5' P O P sing 1.61 N N
37 P O3P P O sing 1.61 N N
38 C2 H2 C H sing 1.08 N N
39 O1P H1P O H sing 0.97 N N
40 C8 H8 C H sing 1.08 N N
41 N6 H6 N H sing 0.97 N N
42 C9 H9 C H sing 1.09 N N