Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 6MZ

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 40


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C2 C C2 N Y N 0 4.85 -1.059 -0.961
2 C4 C C4 N Y N 0 2.811 -0.211 -0.324
3 C5 C C5 N Y N 0 3.452 0.951 0.14
4 O1P O O1P N N N 0 -6.25 0.244 0.138
5 O2P O O2P N N N 0 -4.706 1.944 1.186
6 N9 N N9 N Y N 0 1.473 -0.028 -0.08
7 N3 N N3 N Y N 0 3.543 -1.181 -0.862
8 N1 N N1 N Y N 0 5.496 0.013 -0.54
9 C6 C C6 N Y N 0 4.848 1.034 0.012
10 N6 N N6 N N N 0 5.534 2.154 0.449
11 C9 C C9 N N N 0 6.99 2.223 0.308
12 N7 N N7 N Y N 0 2.49 1.767 0.633
13 C8 C C8 N Y N 0 1.328 1.195 0.505
14 O5' O O5' N N N 0 -3.698 0.344 -0.486
15 C5' C C5' N N N 0 -3.093 -0.612 0.388
16 C4' C C4' R N N 0 -1.898 -1.26 -0.313
17 O4' O O4' N N N 0 -0.864 -0.284 -0.519
18 C1' C C1' R N N 0 0.398 -0.973 -0.391
19 C2' C C2' R N N 0 0.162 -1.942 0.796
20 O2' O O2' N N N 0 1.04 -3.066 0.719
21 C3' C C3' S N N 0 -1.311 -2.375 0.574
22 O3' O O3' N N N 0 -1.369 -3.633 -0.1
23 P P P N N N 0 -4.985 1.218 -0.073
24 O3P O O3P N N Y 0 -5.313 2.276 -1.242
25 H2 H H2 N N N 0 5.416 -1.868 -1.399
26 H1P H H1P N N N 0 -6.49 -0.265 -0.648
27 H8 H H8 N N N 0 0.388 1.625 0.817
28 H1' H H1' N N N 0 0.627 -1.527 -1.302
29 H9C1 H H9C1 N N N 0 7.449 1.401 0.859
30 H9C2 H H9C2 N N N 0 7.257 2.146 -0.747
31 H5'1 H H5'1 N N N 0 -2.754 -0.111 1.295
32 H5'2 H H5'2 N N N 0 -3.822 -1.379 0.648
33 H4' H H4' N N N 0 -2.212 -1.675 -1.271
34 H3' H H3' N N N 0 -1.842 -2.425 1.525
35 H2' H H2' N N N 0 0.278 -1.425 1.748
36 HA H HA N N N 0 0.931 -3.701 1.44
37 HB H HB N N Y 0 -1.012 -4.371 0.414
38 H3P H H3P N N Y 0 -6.079 2.838 -1.06
39 H6 H H6 N N N 0 5.05 2.893 0.85
40 H9 H H9 N N N 0 7.35 3.172 0.705