Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 6E5    

Bonds between two atoms of the molecule

Total Number of Bonds: 73


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 S01 C02 S C sing 1.71 N Y
2 S01 C05 S C sing 1.76 N Y
3 C02 C03 C C doub 1.34 N Y
4 C03 C04 C C sing 1.38 N Y
5 C04 C05 C C doub 1.36 N Y
6 C05 C06 C C sing 1.47 N N
7 C06 N07 C N sing 1.38 N N
8 C06 N08 C N doub 1.31 N N
9 N07 C11 N C sing 1.4 N N
10 N1' C2' N C sing 1.48 N N
11 N1' C5' N C sing 1.47 N N
12 C11 C12 C C doub 1.39 N Y
13 C11 C16 C C sing 1.39 N Y
14 C12 C13 C C sing 1.38 N Y
15 C13 C14 C C doub 1.38 N Y
16 C14 C15 C C sing 1.38 N Y
17 C15 C16 C C doub 1.38 N Y
18 C15 C17 C C sing 1.51 N N
19 C17 O18 C O sing 1.43 N N
20 O18 C19 O C sing 1.43 N N
21 C19 C2' C C sing 1.53 N N
22 C2' C3' C C sing 1.55 N N
23 S21 C22 S C sing 1.71 N Y
24 S21 C25 S C sing 1.76 N Y
25 C22 C23 C C doub 1.34 N Y
26 C23 C24 C C sing 1.38 N Y
27 C24 C25 C C doub 1.36 N Y
28 C25 C26 C C sing 1.47 N N
29 C26 N27 C N sing 1.38 N N
30 C26 N28 C N doub 1.31 N N
31 N27 C31 N C sing 1.4 N N
32 C3' C4' C C sing 1.55 N N
33 C30 C31 C C doub 1.39 N Y
34 C30 C35 C C sing 1.38 N Y
35 C31 C32 C C sing 1.39 N Y
36 C32 C33 C C doub 1.38 N Y
37 C33 C34 C C sing 1.38 N Y
38 C34 C35 C C doub 1.38 N Y
39 C35 C37 C C sing 1.51 N N
40 C37 O38 C O sing 1.43 N N
41 O38 C4' O C sing 1.43 N N
42 C4' C5' C C sing 1.54 N N
43 C02 H02 C H sing 1.08 N N
44 C03 H03 C H sing 1.08 N N
45 C04 H04 C H sing 1.08 N N
46 N07 HN07 N H sing 0.97 N N
47 N08 HN08 N H sing 0.97 N N
48 N1' HN1' N H sing 1.01 N N
49 C12 H12 C H sing 1.08 N N
50 C13 H13 C H sing 1.08 N N
51 C14 H14 C H sing 1.08 N N
52 C16 H16 C H sing 1.08 N N
53 C17 H17 C H sing 1.09 N N
54 C17 H17A C H sing 1.09 N N
55 C19 H19 C H sing 1.09 N N
56 C19 H19A C H sing 1.09 N N
57 C2' H2' C H sing 1.09 N N
58 C22 H22 C H sing 1.08 N N
59 C23 H23 C H sing 1.08 N N
60 C24 H24 C H sing 1.08 N N
61 N28 HN28 N H sing 0.97 N N
62 N27 HN27 N H sing 0.97 N N
63 C3' H3' C H sing 1.09 N N
64 C3' H3'A C H sing 1.09 N N
65 C30 H30 C H sing 1.08 N N
66 C32 H32 C H sing 1.08 N N
67 C33 H33 C H sing 1.08 N N
68 C34 H34 C H sing 1.08 N N
69 C37 H37 C H sing 1.09 N N
70 C37 H37A C H sing 1.09 N N
71 C4' H4' C H sing 1.09 N N
72 C5' H5' C H sing 1.09 N N
73 C5' H5'A C H sing 1.09 N N