Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 6E5

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 69


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 S01 S S01 N Y N 0 -9.912 -1.938 0.254
2 C02 C C02 N Y N 0 -10.459 -3.214 -0.738
3 C03 C C03 N Y N 0 -9.901 -3.149 -1.951
4 C04 C C04 N Y N 0 -9.029 -2.099 -2.136
5 C05 C C05 N Y N 0 -8.894 -1.308 -1.034
6 C06 C C06 N N N 0 -8.036 -0.118 -0.938
7 N07 N N07 N N N 0 -7.985 0.604 0.239
8 N08 N N08 N N N 0 -7.321 0.257 -1.965
9 N1' N N1' N N N 0 -0.89 -0.185 1.394
10 C11 C C11 N Y N 0 -7.084 1.664 0.37
11 C12 C C12 N Y N 0 -7.47 2.829 1.022
12 C13 C C13 N Y N 0 -6.577 3.875 1.15
13 C14 C C14 N Y N 0 -5.301 3.764 0.629
14 C15 C C15 N Y N 0 -4.914 2.607 -0.021
15 C16 C C16 N Y N 0 -5.799 1.554 -0.146
16 C17 C C17 N N N 0 -3.522 2.491 -0.586
17 O18 O O18 N N N 0 -2.649 1.942 0.404
18 C19 C C19 N N N 0 -1.297 1.79 -0.033
19 C2' C C2' S N N 0 -0.458 1.198 1.102
20 S21 S S21 N Y N 0 10.738 0.301 -0.648
21 C22 C C22 N Y N 0 11.366 1.791 -1.192
22 C23 C C23 N Y N 0 10.383 2.624 -1.546
23 C31 C C31 N Y N 0 6.835 -1.939 0.207
24 C24 C C24 N Y N 0 9.11 2.119 -1.4
25 C25 C C25 N Y N 0 9.087 0.845 -0.916
26 C26 C C26 N N N 0 7.876 0.051 -0.659
27 N27 N N27 N N N 0 7.984 -1.235 -0.166
28 N28 N N28 N N N 0 6.697 0.563 -0.897
29 C3' C C3' N N N 0 1.022 1.067 0.665
30 C30 C C30 N Y N 0 5.806 -1.289 0.876
31 C32 C C32 N Y N 0 6.72 -3.291 -0.091
32 C33 C C33 N Y N 0 5.584 -3.984 0.278
33 C34 C C34 N Y N 0 4.562 -3.333 0.944
34 C35 C C35 N Y N 0 4.673 -1.988 1.242
35 C37 C C37 N N N 0 3.556 -1.283 1.968
36 O38 O O38 N N N 0 2.631 -0.751 1.018
37 C4' C C4' S N N 0 1.527 -0.06 1.605
38 C5' C C5' N N N 0 0.301 -0.989 1.724
39 H02 H H02 N N N 0 -11.163 -3.972 -0.428
40 H03 H H03 N N N 0 -10.117 -3.868 -2.727
41 H04 H H04 N N N 0 -8.504 -1.92 -3.063
42 HN07 H HN07 N N N 0 -8.574 0.374 0.975
43 HN08 H HN08 N N N 0 -6.827 1.091 -1.934
44 HN1' H HN1' N N N 0 -1.559 -0.203 2.149
45 H12 H H12 N N N 0 -8.467 2.916 1.428
46 H13 H H13 N N N 0 -6.877 4.781 1.656
47 H14 H H14 N N N 0 -4.605 4.584 0.731
48 H16 H H16 N N N 0 -5.494 0.649 -0.65
49 H17 H H17 N N N 0 -3.537 1.837 -1.459
50 H17A H H17A N N N 0 -3.165 3.478 -0.878
51 H19 H H19 N N N 0 -1.267 1.122 -0.894
52 H19A H H19A N N N 0 -0.894 2.763 -0.314
53 H2' H H2' N N N 0 -0.539 1.818 1.995
54 H22 H H22 N N N 0 12.419 2.029 -1.244
55 H23 H H23 N N N 0 10.573 3.62 -1.918
56 H24 H H24 N N N 0 8.218 2.677 -1.645
57 HN28 H HN28 N N N 0 5.904 0.01 -0.82
58 HN27 H HN27 N N N 0 8.856 -1.649 -0.078
59 H3' H H3' N N N 0 1.096 0.766 -0.38
60 H3'A H H3'A N N N 0 1.565 1.995 0.842
61 H30 H H30 N N N 0 5.894 -0.239 1.113
62 H32 H H32 N N N 0 7.519 -3.8 -0.611
63 H33 H H33 N N N 0 5.495 -5.035 0.046
64 H34 H H34 N N N 0 3.674 -3.878 1.231
65 H5' H H5' N N N 0 0.221 -1.369 2.742
66 H37 H H37 N N N 0 3.042 -1.991 2.619
67 H37A H H37A N N N 0 3.967 -0.472 2.568
68 H4' H H4' N N N 0 1.802 0.346 2.579
69 H5'A H H5'A N N N 0 0.395 -1.818 1.023