Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 62S    

Bonds between two atoms of the molecule

Total Number of Bonds: 80


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O13 P11 O P sing 1.61 N N
2 N10 C09 N C sing 1.47 N N
3 O12 P11 O P doub 1.48 N N
4 P11 C09 P C sing 1.82 N N
5 P11 C14 P C sing 1.82 N N
6 C16 C17 C C sing 1.51 N N
7 C16 C15 C C sing 1.53 N N
8 C18 C17 C C doub 1.35 N Y
9 C18 C19 C C sing 1.42 N Y
10 O28 C23 O C sing 1.36 N N
11 C09 C08 C C sing 1.53 N N
12 C17 O21 C O sing 1.34 N Y
13 C06 C05 C C doub 1.38 N Y
14 C06 C01 C C sing 1.38 N Y
15 C23 C24 C C doub 1.39 N Y
16 C23 C22 C C sing 1.4 N Y
17 C08 C07 C C sing 1.53 N N
18 C24 C25 C C sing 1.38 N Y
19 C19 C22 C C sing 1.48 N N
20 C19 N20 C N doub 1.31 N Y
21 C22 C27 C C doub 1.39 N Y
22 C07 C01 C C sing 1.51 N N
23 C05 C04 C C sing 1.38 N Y
24 C25 C26 C C doub 1.38 N Y
25 C39 C38 C C doub 1.38 N Y
26 C39 C40 C C sing 1.38 N Y
27 C27 C26 C C sing 1.38 N Y
28 O21 N20 O N sing 1.21 N Y
29 C15 C14 C C sing 1.53 N N
30 C15 C29 C C sing 1.51 N N
31 C01 C02 C C doub 1.38 N Y
32 C38 C37 C C sing 1.38 N Y
33 O34 C33 O C doub 1.21 N N
34 N31 C29 N C sing 1.35 N N
35 N31 C32 N C sing 1.46 N N
36 C40 C41 C C doub 1.38 N Y
37 C04 C03 C C doub 1.38 N Y
38 C29 O30 C O doub 1.21 N N
39 C37 C36 C C sing 1.51 N N
40 C37 C42 C C doub 1.38 N Y
41 C02 C03 C C sing 1.38 N Y
42 C36 C32 C C sing 1.53 N N
43 C33 C32 C C sing 1.51 N N
44 C33 N35 C N sing 1.35 N N
45 C41 C42 C C sing 1.38 N Y
46 C15 H151 C H sing 1.09 N N
47 C24 H241 C H sing 1.08 N N
48 C26 H261 C H sing 1.08 N N
49 C02 H021 C H sing 1.08 N N
50 C03 H031 C H sing 1.08 N N
51 C04 H041 C H sing 1.08 N N
52 C05 H051 C H sing 1.08 N N
53 C06 H061 C H sing 1.08 N N
54 C07 H072 C H sing 1.09 N N
55 C07 H071 C H sing 1.09 N N
56 C08 H081 C H sing 1.09 N N
57 C08 H082 C H sing 1.09 N N
58 C09 H091 C H sing 1.09 N N
59 C14 H142 C H sing 1.09 N N
60 C14 H141 C H sing 1.09 N N
61 C16 H161 C H sing 1.09 N N
62 C16 H162 C H sing 1.09 N N
63 C18 H181 C H sing 1.08 N N
64 C25 H251 C H sing 1.08 N N
65 C27 H271 C H sing 1.08 N N
66 C32 H321 C H sing 1.09 N N
67 C36 H362 C H sing 1.09 N N
68 C36 H361 C H sing 1.09 N N
69 C38 H381 C H sing 1.08 N N
70 C39 H391 C H sing 1.08 N N
71 C40 H401 C H sing 1.08 N N
72 C41 H411 C H sing 1.08 N N
73 C42 H421 C H sing 1.08 N N
74 N10 H101 N H sing 1.01 N N
75 N10 H1 N H sing 1.01 N N
76 N31 H311 N H sing 0.97 N N
77 N35 H352 N H sing 0.97 N N
78 N35 H351 N H sing 0.97 N N
79 O13 H131 O H sing 0.97 N N
80 O28 H281 O H sing 0.97 N N