Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 5XM    

Bonds between two atoms of the molecule

Total Number of Bonds: 45


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CAS CAT C C sing 1.53 N N
2 CAS CAR C C sing 1.53 N N
3 CAT CAU C C sing 1.53 N N
4 CAR CAQ C C sing 1.53 N N
5 CAU NAP C N sing 1.47 N N
6 CAQ NAP C N sing 1.47 N N
7 NAP CAO N C sing 1.47 N N
8 CAO CAN C C sing 1.53 N N
9 CAM CAL C C sing 1.54 N N
10 CAM CAN C C sing 1.54 N N
11 CAL NAG C N sing 1.47 N N
12 CAN CAH C C sing 1.52 N N
13 CAH NAG C N sing 1.35 N N
14 CAH NAI C N doub 1.31 N N
15 NAG CAD N C sing 1.39 N N
16 CAC CAD C C doub 1.39 N Y
17 CAC CAB C C sing 1.38 N Y
18 CAD CAE C C sing 1.4 N Y
19 NAI CAJ N C sing 1.34 N N
20 CAB CAA C C doub 1.39 N Y
21 CAE CAJ C C sing 1.47 N N
22 CAE CAF C C doub 1.39 N Y
23 CAJ OAK C O doub 1.22 N N
24 CAA CAF C C sing 1.38 N Y
25 CAQ H1 C H sing 1.09 N N
26 CAQ H2 C H sing 1.09 N N
27 CAR H3 C H sing 1.09 N N
28 CAR H4 C H sing 1.09 N N
29 CAS H5 C H sing 1.09 N N
30 CAS H6 C H sing 1.09 N N
31 CAT H7 C H sing 1.09 N N
32 CAT H8 C H sing 1.09 N N
33 CAU H9 C H sing 1.09 N N
34 CAU H10 C H sing 1.09 N N
35 CAO H12 C H sing 1.09 N N
36 CAO H13 C H sing 1.09 N N
37 CAN H14 C H sing 1.09 N N
38 CAM H15 C H sing 1.09 N N
39 CAM H16 C H sing 1.09 N N
40 CAL H17 C H sing 1.09 N N
41 CAL H18 C H sing 1.09 N N
42 CAC H19 C H sing 1.08 N N
43 CAB H20 C H sing 1.08 N N
44 CAA H21 C H sing 1.08 N N
45 CAF H22 C H sing 1.08 N N