Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 5XM

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 42


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 CAQ C C1 N N N 0 3.49 0.644 0.885
2 CAR C C2 N N N 0 4.13 -0.642 1.411
3 CAS C C3 N N N 0 4.97 -1.28 0.301
4 CAT C C4 N N N 0 4.077 -1.55 -0.913
5 CAU C C5 N N N 0 3.438 -0.237 -1.372
6 NAP N N1 N N N 0 2.645 0.333 -0.275
7 CAO C C6 N N N 0 1.906 1.521 -0.722
8 CAN C C7 R N N 0 0.745 1.79 0.238
9 CAM C C8 N N N 0 -0.042 3.042 -0.205
10 CAL C C9 N N N 0 -1.486 2.647 0.166
11 NAG N N2 N N N 0 -1.516 1.174 0.128
12 CAH C C10 N N N 0 -0.272 0.662 0.172
13 NAI N N3 N N N 0 -0.04 -0.631 0.158
14 CAJ C C11 N N N 0 -1.023 -1.543 0.095
15 OAK O O1 N N N 0 -0.773 -2.736 0.086
16 CAE C C12 N Y N 0 -2.412 -1.056 0.037
17 CAD C C13 N Y N 0 -2.617 0.333 0.056
18 CAC C C14 N Y N 0 -3.91 0.837 0.003
19 CAB C C15 N Y N 0 -4.978 -0.032 -0.067
20 CAA C C16 N Y N 0 -4.775 -1.405 -0.085
21 CAF C C17 N Y N 0 -3.499 -1.923 -0.034
22 H1 H H1 N N N 0 2.88 1.093 1.669
23 H2 H H2 N N N 0 4.272 1.343 0.588
24 H3 H H3 N N N 0 4.77 -0.409 2.263
25 H4 H H4 N N N 0 3.35 -1.337 1.722
26 H5 H H5 N N N 0 5.775 -0.601 0.018
27 H6 H H6 N N N 0 5.393 -2.219 0.658
28 H7 H H7 N N N 0 4.678 -1.964 -1.722
29 H8 H H8 N N N 0 3.296 -2.259 -0.639
30 H9 H H9 N N N 0 4.22 0.467 -1.658
31 H10 H H10 N N N 0 2.79 -0.428 -2.227
32 H12 H H12 N N N 0 2.575 2.381 -0.734
33 H13 H H13 N N N 0 1.515 1.35 -1.725
34 H14 H H14 N N N 0 1.115 1.911 1.257
35 H15 H H15 N N N 0 0.278 3.922 0.352
36 H16 H H16 N N N 0 0.055 3.204 -1.279
37 H17 H H17 N N N 0 -1.729 3.003 1.167
38 H18 H H18 N N N 0 -2.188 3.057 -0.561
39 H19 H H19 N N N 0 -4.078 1.904 0.017
40 H20 H H20 N N N 0 -5.984 0.36 -0.108
41 H21 H H21 N N N 0 -5.623 -2.071 -0.14
42 H22 H H22 N N N 0 -3.344 -2.992 -0.048