Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 59S    

Bonds between two atoms of the molecule

Total Number of Bonds: 82


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O01 C02 O C doub 1.21 N N
2 C02 C03 C C sing 1.51 N N
3 C18 C16 C C sing 1.53 N N
4 C03 N12 C N sing 1.47 N N
5 C03 C04 C C sing 1.53 N N
6 C15 C16 C C sing 1.53 N N
7 C15 C14 C C sing 1.53 N N
8 N12 C13 N C sing 1.35 N N
9 C16 C17 C C sing 1.53 N N
10 C04 C05 C C sing 1.53 N N
11 C13 O39 C O doub 1.21 N N
12 C13 C14 C C sing 1.51 N N
13 C14 N19 C N sing 1.47 N N
14 C05 C06 C C sing 1.53 N N
15 C05 C10 C C sing 1.5 N N
16 C06 C07 C C sing 1.53 N N
17 N19 C20 N C sing 1.35 N N
18 O11 C10 O C doub 1.21 N N
19 C07 C08 C C sing 1.53 N N
20 C10 N09 C N sing 1.33 N N
21 C20 O38 C O doub 1.21 N N
22 C20 C21 C C sing 1.51 N N
23 N09 C08 N C sing 1.46 N N
24 C24 C22 C C sing 1.53 N N
25 C21 C22 C C sing 1.53 N N
26 C21 N25 C N sing 1.46 N N
27 C22 C23 C C sing 1.53 N N
28 N25 C26 N C sing 1.35 N N
29 O37 C26 O C doub 1.22 N N
30 C26 C27 C C sing 1.46 N N
31 C27 C28 C C doub 1.35 E N
32 C28 C29 C C sing 1.47 N N
33 C29 C36 C C doub 1.4 N Y
34 C29 C30 C C sing 1.4 N Y
35 C36 C35 C C sing 1.38 N Y
36 C30 C31 C C doub 1.38 N Y
37 C35 C32 C C doub 1.39 N Y
38 C31 C32 C C sing 1.39 N Y
39 C32 O33 C O sing 1.36 N N
40 O33 C34 O C sing 1.43 N N
41 N12 H1 N H sing 0.97 N N
42 C15 H2 C H sing 1.09 N N
43 C15 H3 C H sing 1.09 N N
44 C17 H4 C H sing 1.09 N N
45 C17 H5 C H sing 1.09 N N
46 C17 H6 C H sing 1.09 N N
47 C21 H7 C H sing 1.09 N N
48 C22 H8 C H sing 1.09 N N
49 C24 H9 C H sing 1.09 N N
50 C24 H10 C H sing 1.09 N N
51 C24 H11 C H sing 1.09 N N
52 C28 H12 C H sing 1.08 N N
53 C02 H14 C H sing 1.08 N N
54 C03 H15 C H sing 1.09 N N
55 C04 H16 C H sing 1.09 N N
56 C04 H17 C H sing 1.09 N N
57 C05 H18 C H sing 1.09 N N
58 C06 H19 C H sing 1.09 N N
59 C06 H20 C H sing 1.09 N N
60 C07 H21 C H sing 1.09 N N
61 C07 H22 C H sing 1.09 N N
62 C08 H23 C H sing 1.09 N N
63 C08 H24 C H sing 1.09 N N
64 C14 H25 C H sing 1.09 N N
65 C16 H26 C H sing 1.09 N N
66 C18 H27 C H sing 1.09 N N
67 C18 H28 C H sing 1.09 N N
68 C18 H29 C H sing 1.09 N N
69 C23 H30 C H sing 1.09 N N
70 C23 H31 C H sing 1.09 N N
71 C23 H32 C H sing 1.09 N N
72 C27 H33 C H sing 1.08 N N
73 C30 H35 C H sing 1.08 N N
74 C31 H36 C H sing 1.08 N N
75 C34 H37 C H sing 1.09 N N
76 C34 H38 C H sing 1.09 N N
77 C34 H39 C H sing 1.09 N N
78 C35 H40 C H sing 1.08 N N
79 C36 H41 C H sing 1.08 N N
80 N09 H42 N H sing 0.97 N N
81 N19 H43 N H sing 0.97 N N
82 N25 H44 N H sing 0.97 N N