data_59S
#
_chem_comp.id 59S
_chem_comp.name
(2S)-2-[[(2S)-2-[[(E)-3-(4-methoxyphenyl)prop-2-enoyl]amino]-3-methyl-butanoyl]amino]-4-methyl-N-[(2S)-1-oxidanylidene-3-[(3S)-2-oxidanylidenepiperidin-3-yl]propan-2-yl]pentanamide
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C29 H42 N4 O6"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2022-02-02
_chem_comp.pdbx_modified_date 2022-04-08
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 542.667
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 59S
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 7WO3
_chem_comp.pdbx_subcomponent_list "K3Z VAL LEU ELF"
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
59S C26 C9 C 0 1 N N N N N N 19.989 16.919 30.564 -3.659 0.580 -1.039 C02 K3Z 1
59S C27 C22 C 0 1 N N N N N N 19.257 17.670 31.712 -4.887 0.384 -0.269 C04 K3Z 2
59S C28 C10 C 0 1 N N N N N N 20.219 17.342 32.570 -6.079 0.334 -0.900 C05 K3Z 3
59S C29 C23 C 0 1 Y N N N N N 20.286 17.727 34.052 -7.313 0.137 -0.125 C06 K3Z 4
59S C30 C24 C 0 1 Y N N N N N 19.281 18.383 34.726 -7.255 0.007 1.267 C07 K3Z 5
59S C31 C25 C 0 1 Y N N N N N 19.474 18.676 36.084 -8.414 -0.177 1.987 C08 K3Z 6
59S C32 C26 C 0 1 Y N N N N N 20.660 18.314 36.729 -9.639 -0.234 1.334 C09 K3Z 7
59S C34 C27 C 0 1 N N N N N N 22.226 18.825 38.407 -12.004 -0.464 1.316 C11 K3Z 8
59S C35 C28 C 0 1 Y N N N N N 21.666 17.647 36.030 -9.703 -0.106 -0.048 C12 K3Z 9
59S C36 C29 C 0 1 Y N N N N N 21.478 17.359 34.700 -8.550 0.084 -0.778 C13 K3Z 10
59S O37 O4 O 0 1 N N N N N N 21.020 17.351 30.176 -3.713 0.698 -2.249 O03 K3Z 11
59S O33 O3 O 0 1 N N N N N N 20.872 18.606 38.092 -10.779 -0.416 2.049 O10 K3Z 12
59S N25 N4 N 0 1 N N N N N N 19.497 15.615 30.035 -2.469 0.631 -0.409 N VAL 13
59S C21 C6 C 0 1 N N S N N N 20.281 14.952 29.030 -1.240 0.827 -1.181 CA VAL 14
59S C20 C5 C 0 1 N N N N N N 19.486 14.850 27.731 -0.072 0.255 -0.419 C VAL 15
59S O38 O5 O 0 1 N N N N N N 18.378 14.432 27.755 -0.157 0.077 0.778 O VAL 16
59S C22 C7 C 0 1 N N N N N N 20.585 13.550 29.583 -1.015 2.323 -1.411 CB VAL 17
59S C24 C8 C 0 1 N N N N N N 21.433 12.695 28.571 -2.129 2.874 -2.303 CG1 VAL 18
59S C23 C21 C 0 1 N N N N N N 21.327 13.722 30.967 -1.030 3.053 -0.066 CG2 VAL 19
59S N19 N3 N 0 1 N N N N N N 20.116 15.291 26.467 1.068 -0.057 -1.067 N LEU 20
59S C14 C18 C 0 1 N N S N N N 19.312 15.174 25.249 2.161 -0.719 -0.350 CA LEU 21
59S C13 C2 C 0 1 N N N N N N 19.396 13.709 24.833 3.467 -0.420 -1.039 C LEU 22
59S O39 O6 O 0 1 N N N N N N 20.396 13.108 25.005 3.484 0.278 -2.031 O LEU 23
59S C15 C3 C 0 1 N N N N N N 19.866 16.084 24.144 1.923 -2.231 -0.342 CB LEU 24
59S C16 C19 C 0 1 N N N N N N 20.116 17.549 24.636 0.662 -2.544 0.465 CG LEU 25
59S C17 C4 C 0 1 N N N N N N 18.786 18.192 25.101 0.354 -4.040 0.370 CD1 LEU 26
59S C18 C20 C 0 1 N N N N N N 20.722 18.360 23.484 0.884 -2.161 1.929 CD2 LEU 27
59S C07 C16 C 0 1 N N N N N N 19.092 9.089 26.860 7.022 2.746 1.392 C6 ELF 28
59S C03 C12 C 0 1 N N S N N N 18.508 11.601 23.940 5.887 -0.636 -1.222 C11 ELF 29
59S C06 C15 C 0 1 N N N N N N 18.959 10.467 26.435 6.938 1.716 0.259 C13 ELF 30
59S C10 C1 C 0 1 N N N N N N 16.460 10.111 26.998 7.905 0.152 1.927 C15 ELF 31
59S C04 C13 C 0 1 N N N N N N 17.337 10.847 24.660 7.031 -0.736 -0.211 C17 ELF 32
59S C02 C11 C 0 1 N N N N N N 18.649 11.292 22.463 6.110 -1.630 -2.332 C24 ELF 33
59S C05 C14 C 0 1 N N S N N N 17.611 10.911 26.243 6.842 0.320 0.880 C25 ELF 34
59S C08 C17 C 0 1 N N N N N N 18.376 8.837 28.125 8.357 2.569 2.116 C27 ELF 35
59S N12 N1 N 0 1 N N N N N N 18.252 13.000 24.224 4.617 -0.927 -0.552 N3 ELF 36
59S N09 N2 N 0 1 N N N N N N 16.872 9.010 27.989 8.558 1.173 2.484 N4 ELF 37
59S O01 O1 O 0 1 N N N N N N 17.775 10.762 21.871 5.292 -2.493 -2.542 O3 ELF 38
59S O11 O2 O 0 1 N N N N N N 15.318 10.377 26.790 8.182 -0.972 2.290 O4 ELF 39
59S H33 H33 H 0 1 N N N N N N 18.337 18.232 31.784 -4.840 0.280 0.805 H041 K3Z 40
59S H12 H12 H 0 1 N N N N N N 21.033 16.746 32.184 -6.127 0.438 -1.974 H051 K3Z 41
59S H35 H35 H 0 1 N N N N N N 18.368 18.665 34.222 -6.303 0.050 1.775 H071 K3Z 42
59S H36 H36 H 0 1 N N N N N N 18.699 19.186 36.637 -8.370 -0.278 3.062 H081 K3Z 43
59S H37 H37 H 0 1 N N N N N N 22.322 19.047 39.480 -12.835 -0.613 2.006 H111 K3Z 44
59S H39 H39 H 0 1 N N N N N N 22.606 19.675 37.822 -11.970 -1.290 0.605 H113 K3Z 45
59S H38 H38 H 0 1 N N N N N N 22.809 17.924 38.165 -12.143 0.473 0.777 H112 K3Z 46
59S H40 H40 H 0 1 N N N N N N 22.581 17.361 36.528 -10.657 -0.151 -0.551 H121 K3Z 47
59S H41 H41 H 0 1 N N N N N N 22.252 16.846 34.148 -8.601 0.189 -1.851 H131 K3Z 48
59S H44 H44 H 0 1 N N N N N N 18.645 15.213 30.370 -2.427 0.537 0.556 H VAL 49
59S H7 H7 H 0 1 N N N N N N 21.224 15.489 28.847 -1.329 0.321 -2.142 HA VAL 50
59S H8 H8 H 0 1 N N N N N N 19.634 13.028 29.765 -0.052 2.475 -1.897 HB VAL 51
59S H9 H9 H 0 1 N N N N N N 21.628 11.702 29.003 -3.079 2.825 -1.770 HG11 VAL 52
59S H10 H10 H 0 1 N N N N N N 20.875 12.582 27.630 -1.910 3.911 -2.559 HG12 VAL 53
59S H11 H11 H 0 1 N N N N N N 22.388 13.203 28.373 -2.193 2.280 -3.214 HG13 VAL 54
59S H30 H30 H 0 1 N N N N N N 20.704 14.324 31.645 -0.236 2.661 0.569 HG21 VAL 55
59S H31 H31 H 0 1 N N N N N N 21.504 12.732 31.413 -0.870 4.119 -0.230 HG22 VAL 56
59S H32 H32 H 0 1 N N N N N N 22.290 14.230 30.806 -1.993 2.901 0.420 HG23 VAL 57
59S H43 H43 H 0 1 N N N N N N 21.048 15.652 26.446 1.164 0.156 -2.009 H2 LEU 58
59S H25 H25 H 0 1 N N N N N N 18.264 15.440 25.453 2.198 -0.351 0.675 HA LEU 59
59S H2 H2 H 0 1 N N N N N N 19.144 16.110 23.315 1.798 -2.585 -1.365 HB2 LEU 60
59S H3 H3 H 0 1 N N N N N N 20.819 15.665 23.788 2.779 -2.730 0.113 HB3 LEU 61
59S H26 H26 H 0 1 N N N N N N 20.822 17.528 25.479 -0.177 -1.975 0.064 HG LEU 62
59S H4 H4 H 0 1 N N N N N N 18.362 17.602 25.927 1.193 -4.609 0.771 HD11 LEU 63
59S H5 H5 H 0 1 N N N N N N 18.976 19.219 25.445 -0.544 -4.264 0.945 HD12 LEU 64
59S H6 H6 H 0 1 N N N N N N 18.075 18.212 24.262 0.196 -4.313 -0.673 HD13 LEU 65
59S H27 H27 H 0 1 N N N N N N 20.903 19.393 23.817 1.722 -2.730 2.331 HD21 LEU 66
59S H28 H28 H 0 1 N N N N N N 21.674 17.903 23.175 1.103 -1.095 1.997 HD22 LEU 67
59S H29 H29 H 0 1 N N N N N N 20.025 18.366 22.633 -0.015 -2.385 2.504 HD23 LEU 68
59S H21 H21 H 0 1 N N N N N N 18.678 8.434 26.079 6.961 3.752 0.977 H1 ELF 69
59S H22 H22 H 0 1 N N N N N N 20.159 8.861 27.003 6.202 2.586 2.093 H2 ELF 70
59S H15 H15 H 0 1 N N N N N N 19.443 11.305 24.438 5.857 0.371 -1.637 H3 ELF 71
59S H19 H19 H 0 1 N N N N N N 19.496 10.584 25.482 7.831 1.780 -0.362 H4 ELF 72
59S H20 H20 H 0 1 N N N N N N 19.424 11.107 27.199 6.053 1.909 -0.347 H5 ELF 73
59S H16 H16 H 0 1 N N N N N N 16.379 11.334 24.426 7.032 -1.728 0.241 H6 ELF 74
59S H17 H17 H 0 1 N N N N N N 17.307 9.799 24.328 7.981 -0.567 -0.718 H7 ELF 75
59S H14 H14 H 0 1 N N N N N N 19.559 11.559 21.946 7.001 -1.571 -2.939 H8 ELF 76
59S H18 H18 H 0 1 N N N N N N 17.529 11.966 26.544 5.860 0.196 1.338 H9 ELF 77
59S H23 H23 H 0 1 N N N N N N 18.584 7.807 28.449 9.167 2.889 1.461 H10 ELF 78
59S H24 H24 H 0 1 N N N N N N 18.745 9.542 28.885 8.361 3.181 3.019 H11 ELF 79
59S H1 H1 H 0 1 N N N N N N 17.379 13.445 24.025 4.604 -1.485 0.241 H12 ELF 80
59S H42 H42 H 0 1 N N N N N N 16.211 8.458 28.498 9.207 0.975 3.177 H15 ELF 81
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
59S O01 C02 DOUB N N 1
59S C02 C03 SING N N 2
59S C18 C16 SING N N 3
59S C03 N12 SING N N 4
59S C03 C04 SING N N 5
59S C15 C16 SING N N 6
59S C15 C14 SING N N 7
59S N12 C13 SING N N 8
59S C16 C17 SING N N 9
59S C04 C05 SING N N 10
59S C13 O39 DOUB N N 11
59S C13 C14 SING N N 12
59S C14 N19 SING N N 13
59S C05 C06 SING N N 14
59S C05 C10 SING N N 15
59S C06 C07 SING N N 16
59S N19 C20 SING N N 17
59S O11 C10 DOUB N N 18
59S C07 C08 SING N N 19
59S C10 N09 SING N N 20
59S C20 O38 DOUB N N 21
59S C20 C21 SING N N 22
59S N09 C08 SING N N 23
59S C24 C22 SING N N 24
59S C21 C22 SING N N 25
59S C21 N25 SING N N 26
59S C22 C23 SING N N 27
59S N25 C26 SING N N 28
59S O37 C26 DOUB N N 29
59S C26 C27 SING N N 30
59S C27 C28 DOUB N E 31
59S C28 C29 SING N N 32
59S C29 C36 DOUB Y N 33
59S C29 C30 SING Y N 34
59S C36 C35 SING Y N 35
59S C30 C31 DOUB Y N 36
59S C35 C32 DOUB Y N 37
59S C31 C32 SING Y N 38
59S C32 O33 SING N N 39
59S O33 C34 SING N N 40
59S N12 H1 SING N N 41
59S C15 H2 SING N N 42
59S C15 H3 SING N N 43
59S C17 H4 SING N N 44
59S C17 H5 SING N N 45
59S C17 H6 SING N N 46
59S C21 H7 SING N N 47
59S C22 H8 SING N N 48
59S C24 H9 SING N N 49
59S C24 H10 SING N N 50
59S C24 H11 SING N N 51
59S C28 H12 SING N N 52
59S C02 H14 SING N N 53
59S C03 H15 SING N N 54
59S C04 H16 SING N N 55
59S C04 H17 SING N N 56
59S C05 H18 SING N N 57
59S C06 H19 SING N N 58
59S C06 H20 SING N N 59
59S C07 H21 SING N N 60
59S C07 H22 SING N N 61
59S C08 H23 SING N N 62
59S C08 H24 SING N N 63
59S C14 H25 SING N N 64
59S C16 H26 SING N N 65
59S C18 H27 SING N N 66
59S C18 H28 SING N N 67
59S C18 H29 SING N N 68
59S C23 H30 SING N N 69
59S C23 H31 SING N N 70
59S C23 H32 SING N N 71
59S C27 H33 SING N N 72
59S C30 H35 SING N N 73
59S C31 H36 SING N N 74
59S C34 H37 SING N N 75
59S C34 H38 SING N N 76
59S C34 H39 SING N N 77
59S C35 H40 SING N N 78
59S C36 H41 SING N N 79
59S N09 H42 SING N N 80
59S N19 H43 SING N N 81
59S N25 H44 SING N N 82
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
59S InChI InChI 1.03 InChI=1S/C29H42N4O6/c1-18(2)15-24(28(37)31-22(17-34)16-21-7-6-14-30-27(21)36)32-29(38)26(19(3)4)33-25(35)13-10-20-8-11-23(39-5)12-9-20/h8-13,17-19,21-22,24,26H,6-7,14-16H2,1-5H3,(H,30,36)(H,31,37)(H,32,38)(H,33,35)/b13-10+/t21-,22-,24-,26-/m0/s1
59S InChIKey InChI 1.03 ICHROBBMJKBDDC-SXDMNLNLSA-N
59S SMILES_CANONICAL CACTVS 3.385 COc1ccc(/C=C/C(=O)N[C@@H](C(C)C)C(=O)N[C@@H](CC(C)C)C(=O)N[C@@H](C[C@@H]2CCCNC2=O)C=O)cc1
59S SMILES CACTVS 3.385 COc1ccc(C=CC(=O)N[CH](C(C)C)C(=O)N[CH](CC(C)C)C(=O)N[CH](C[CH]2CCCNC2=O)C=O)cc1
59S SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCCNC1=O)C=O)NC(=O)[C@H](C(C)C)NC(=O)/C=C/c2ccc(cc2)OC
59S SMILES "OpenEye OEToolkits" 2.0.7 CC(C)CC(C(=O)NC(CC1CCCNC1=O)C=O)NC(=O)C(C(C)C)NC(=O)C=Cc2ccc(cc2)OC
#
_pdbx_chem_comp_identifier.comp_id 59S
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier
(2~{S})-2-[[(2~{S})-2-[[(~{E})-3-(4-methoxyphenyl)prop-2-enoyl]amino]-3-methyl-butanoyl]amino]-4-methyl-~{N}-[(2~{S})-1-oxidanylidene-3-[(3~{S})-2-oxidanylidenepiperidin-3-yl]propan-2-yl]pentanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
59S 'Create component' 2022-02-02 PDBJ
59S 'Initial release' 2022-04-13 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
59S C26 C 9.495 3.840 1
59S C27 C 10.794 4.590 2
59S C28 C 10.794 6.090 3
59S C29 C 12.093 6.840 4
59S C30 C 12.093 8.340 5
59S C31 C 13.392 9.090 6
59S C32 C 14.691 8.340 7
59S C34 C 15.990 10.590 8
59S C35 C 14.691 6.840 9
59S C36 C 13.392 6.090 10
59S O37 O 8.196 4.590 11
59S O33 O 15.990 9.090 12
59S N25 N 9.495 2.340 13
59S C21 C 8.196 1.590 14
59S C20 C 8.196 0.090 15
59S O38 O 9.495 -0.660 16
59S C22 C 6.897 2.340 17
59S C24 C 6.897 3.840 18
59S C23 C 5.598 1.590 19
59S N19 N 6.897 -0.660 20
59S C14 C 6.897 -2.160 21
59S C13 C 8.196 -2.910 22
59S O39 O 9.495 -2.160 23
59S C15 C 5.598 -2.910 24
59S C16 C 4.299 -2.160 25
59S C17 C 4.299 -0.660 26
59S C18 C 3.000 -2.910 27
59S C07 C 13.392 -7.410 28
59S C03 C 9.495 -5.160 29
59S C06 C 12.093 -6.660 30
59S C10 C 10.794 -8.910 31
59S C04 C 9.495 -6.660 32
59S C02 C 10.794 -4.410 33
59S C05 C 10.794 -7.410 34
59S C08 C 13.392 -8.910 35
59S N12 N 8.196 -4.410 36
59S N09 N 12.093 -9.660 37
59S O01 O 10.794 -2.910 38
59S O11 O 9.495 -9.660 39
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
59S O01 C02 DOUBLE NONE 1
59S C02 C03 SINGLE NONE 2
59S C18 C16 SINGLE NONE 3
59S C03 N12 SINGLE NONE 4
59S C03 C04 SINGLE BEGINDASH 5
59S C15 C16 SINGLE NONE 6
59S C14 C15 SINGLE BEGINDASH 7
59S N12 C13 SINGLE NONE 8
59S C16 C17 SINGLE NONE 9
59S C05 C04 SINGLE BEGINDASH 10
59S C13 O39 DOUBLE NONE 11
59S C13 C14 SINGLE NONE 12
59S C14 N19 SINGLE NONE 13
59S C05 C06 SINGLE NONE 14
59S C05 C10 SINGLE NONE 15
59S C06 C07 SINGLE NONE 16
59S N19 C20 SINGLE NONE 17
59S O11 C10 DOUBLE NONE 18
59S C07 C08 SINGLE NONE 19
59S C10 N09 SINGLE NONE 20
59S C20 O38 DOUBLE NONE 21
59S C20 C21 SINGLE NONE 22
59S N09 C08 SINGLE NONE 23
59S C24 C22 SINGLE NONE 24
59S C21 C22 SINGLE NONE 25
59S C21 N25 SINGLE BEGINDASH 26
59S C22 C23 SINGLE NONE 27
59S N25 C26 SINGLE NONE 28
59S O37 C26 DOUBLE NONE 29
59S C26 C27 SINGLE ENDUPRIGHT 30
59S C27 C28 DOUBLE NONE 31
59S C28 C29 SINGLE ENDUPRIGHT 32
59S C29 C36 SINGLE NONE 33
59S C29 C30 DOUBLE NONE 34
59S C36 C35 DOUBLE NONE 35
59S C30 C31 SINGLE NONE 36
59S C35 C32 SINGLE NONE 37
59S C31 C32 DOUBLE NONE 38
59S C32 O33 SINGLE NONE 39
59S O33 C34 SINGLE NONE 40
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
59S MurckoScaffold S1 scaffold 'O=C(/C=C/c1ccccc1)NCC(=O)NCC(=O)NCC[C@@H]1CCCNC1=O' InChI=1S/C20H26N4O4/c25-17(9-8-15-5-2-1-3-6-15)23-14-19(27)24-13-18(26)21-12-10-16-7-4-11-22-20(16)28/h1-3,5-6,8-9,16H,4,7,10-14H2,(H,21,26)(H,22,28)(H,23,25)(H,24,27)/b9-8+/t16-/m0/s1 UOPDYDCXSRODDI-FDMDGMSGSA-N
59S amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
59S peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
59S phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
59S C26 S1 1
59S C27 S1 1
59S C28 S1 1
59S C29 S1 1
59S C30 S1 1
59S C31 S1 1
59S C32 S1 1
59S C35 S1 1
59S C36 S1 1
59S O37 S1 1
59S N25 S1 1
59S C21 S1 1
59S C20 S1 1
59S O38 S1 1
59S N19 S1 1
59S C14 S1 1
59S C13 S1 1
59S O39 S1 1
59S C07 S1 1
59S C03 S1 1
59S C06 S1 1
59S C10 S1 1
59S C04 S1 1
59S C05 S1 1
59S C08 S1 1
59S N12 S1 1
59S N09 S1 1
59S O11 S1 1
59S N25 F1 1
59S C26 F1 1
59S O37 F1 1
59S C27 F1 1
59S N19 F1 2
59S C20 F1 2
59S O38 F1 2
59S C21 F1 2
59S N12 F1 3
59S C13 F1 3
59S O39 F1 3
59S C14 F1 3
59S N09 F1 4
59S C10 F1 4
59S O11 F1 4
59S C05 F1 4
59S O38 F2 1
59S C20 F2 1
59S C21 F2 1
59S N25 F2 1
59S O39 F2 2
59S C13 F2 2
59S C14 F2 2
59S N19 F2 2
59S O01 F2 3
59S C02 F2 3
59S C03 F2 3
59S N12 F2 3
59S C29 F3 1
59S C36 F3 1
59S C35 F3 1
59S C32 F3 1
59S C31 F3 1
59S C30 F3 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 59S
_pdbe_chem_comp_rdkit_properties.exactmw 542.310
_pdbe_chem_comp_rdkit_properties.amw 542.677
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 4
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 4
_pdbe_chem_comp_rdkit_properties.NumHBA 6
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 39
_pdbe_chem_comp_rdkit_properties.NumAtoms 81
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 4
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.552
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 289.491
_pdbe_chem_comp_rdkit_properties.tpsa 142.700
_pdbe_chem_comp_rdkit_properties.CrippenClogP 1.463
_pdbe_chem_comp_rdkit_properties.CrippenMR 147.652
_pdbe_chem_comp_rdkit_properties.chi0v 18.738
_pdbe_chem_comp_rdkit_properties.chi1v 9.468
_pdbe_chem_comp_rdkit_properties.chi2v 3.479
_pdbe_chem_comp_rdkit_properties.chi3v 3.479
_pdbe_chem_comp_rdkit_properties.chi4v 1.985
_pdbe_chem_comp_rdkit_properties.chi0n 60.738
_pdbe_chem_comp_rdkit_properties.chi1n 30.257
_pdbe_chem_comp_rdkit_properties.chi2n 3.479
_pdbe_chem_comp_rdkit_properties.chi3n 3.479
_pdbe_chem_comp_rdkit_properties.chi4n 1.985
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -3.690
_pdbe_chem_comp_rdkit_properties.kappa1 6.778
_pdbe_chem_comp_rdkit_properties.kappa2 15.657
_pdbe_chem_comp_rdkit_properties.kappa3 10.534
_pdbe_chem_comp_rdkit_properties.Phi 2.721
#
_pdbe_chem_comp_external_mappings.comp_id 59S
_pdbe_chem_comp_external_mappings.source UniChem
_pdbe_chem_comp_external_mappings.resource PubChem
_pdbe_chem_comp_external_mappings.resource_id 163183776
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
59S C26 2.962 0.786 -1.890 ETKDGv3 1
59S C27 4.409 0.505 -1.968 ETKDGv3 2
59S C28 4.961 -0.608 -1.464 ETKDGv3 3
59S C29 6.407 -0.925 -1.555 ETKDGv3 4
59S C30 7.355 0.023 -1.703 ETKDGv3 5
59S C31 8.784 -0.350 -1.769 ETKDGv3 6
59S C32 9.157 -1.641 -1.666 ETKDGv3 7
59S C34 11.608 -1.173 -1.892 ETKDGv3 8
59S C35 8.119 -2.678 -1.485 ETKDGv3 9
59S C36 6.825 -2.342 -1.429 ETKDGv3 10
59S O37 2.469 1.624 -2.692 ETKDGv3 11
59S O33 10.499 -2.051 -1.722 ETKDGv3 12
59S N25 2.122 0.155 -0.908 ETKDGv3 13
59S C21 0.656 0.184 -1.003 ETKDGv3 14
59S C20 0.026 -0.164 0.330 ETKDGv3 15
59S O38 0.442 -1.160 0.983 ETKDGv3 16
59S C22 0.161 -0.734 -2.155 ETKDGv3 17
59S C24 -1.360 -0.643 -2.342 ETKDGv3 18
59S C23 0.591 -2.200 -1.983 ETKDGv3 19
59S N19 -1.069 0.618 0.832 ETKDGv3 20
59S C14 -1.724 0.322 2.111 ETKDGv3 21
59S C13 -3.100 0.941 2.122 ETKDGv3 22
59S O39 -3.217 2.197 2.170 ETKDGv3 23
59S C15 -0.854 0.840 3.277 ETKDGv3 24
59S C16 -1.446 0.570 4.683 ETKDGv3 25
59S C17 -0.591 1.266 5.750 ETKDGv3 26
59S C18 -1.540 -0.933 4.990 ETKDGv3 27
59S C07 -5.719 2.469 -2.087 ETKDGv3 28
59S C03 -5.562 0.619 1.569 ETKDGv3 29
59S C06 -4.600 1.918 -1.197 ETKDGv3 30
59S C10 -5.072 -0.342 -2.175 ETKDGv3 31
59S C04 -5.876 0.102 0.147 ETKDGv3 32
59S C02 -6.636 0.194 2.532 ETKDGv3 33
59S C05 -4.776 0.411 -0.902 ETKDGv3 34
59S C08 -5.732 1.752 -3.438 ETKDGv3 35
59S N12 -4.266 0.110 2.027 ETKDGv3 36
59S N09 -5.734 0.300 -3.274 ETKDGv3 37
59S O01 -6.836 -0.989 2.764 ETKDGv3 38
59S O11 -4.794 -1.569 -2.250 ETKDGv3 39
59S H33 5.015 1.209 -2.523 ETKDGv3 40
59S H12 4.323 -1.364 -1.025 ETKDGv3 41
59S H35 7.104 1.073 -1.750 ETKDGv3 42
59S H36 9.513 0.438 -1.897 ETKDGv3 43
59S H37 12.543 -1.769 -1.901 ETKDGv3 44
59S H39 11.522 -0.632 -2.858 ETKDGv3 45
59S H38 11.655 -0.449 -1.051 ETKDGv3 46
59S H40 8.410 -3.717 -1.396 ETKDGv3 47
59S H41 6.080 -3.118 -1.296 ETKDGv3 48
59S H44 2.573 -0.312 -0.090 ETKDGv3 49
59S H7 0.356 1.227 -1.246 ETKDGv3 50
59S H8 0.622 -0.367 -3.099 ETKDGv3 51
59S H9 -1.665 -1.190 -3.260 ETKDGv3 52
59S H10 -1.889 -1.091 -1.475 ETKDGv3 53
59S H11 -1.674 0.417 -2.451 ETKDGv3 54
59S H30 1.692 -2.273 -1.856 ETKDGv3 55
59S H31 0.093 -2.663 -1.107 ETKDGv3 56
59S H32 0.315 -2.782 -2.888 ETKDGv3 57
59S H43 -1.403 1.428 0.262 ETKDGv3 58
59S H25 -1.830 -0.780 2.196 ETKDGv3 59
59S H2 -0.707 1.935 3.147 ETKDGv3 60
59S H3 0.153 0.372 3.215 ETKDGv3 61
59S H26 -2.468 1.004 4.744 ETKDGv3 62
59S H4 -0.553 2.359 5.559 ETKDGv3 63
59S H5 0.445 0.864 5.746 ETKDGv3 64
59S H6 -1.032 1.112 6.758 ETKDGv3 65
59S H27 -2.297 -1.418 4.339 ETKDGv3 66
59S H28 -0.557 -1.427 4.841 ETKDGv3 67
59S H29 -1.863 -1.092 6.041 ETKDGv3 68
59S H21 -6.705 2.353 -1.588 ETKDGv3 69
59S H22 -5.552 3.555 -2.254 ETKDGv3 70
59S H15 -5.567 1.728 1.562 ETKDGv3 71
59S H19 -3.627 2.069 -1.715 ETKDGv3 72
59S H20 -4.547 2.509 -0.262 ETKDGv3 73
59S H16 -6.001 -1.003 0.202 ETKDGv3 74
59S H17 -6.850 0.518 -0.188 ETKDGv3 75
59S H14 -7.240 0.944 3.031 ETKDGv3 76
59S H18 -3.807 0.032 -0.514 ETKDGv3 77
59S H23 -4.835 2.047 -4.025 ETKDGv3 78
59S H24 -6.634 2.060 -4.008 ETKDGv3 79
59S H1 -4.151 -0.925 2.123 ETKDGv3 80
59S H42 -6.013 -0.284 -4.094 ETKDGv3 81
#