Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 4RA    

Bonds between two atoms of the molecule

Total Number of Bonds: 92


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C2A C2 C C sing 1.51 N N
2 N1 C2 N C doub 1.32 N Y
3 N1 C6 N C sing 1.32 N Y
4 C2 C3 C C sing 1.39 N Y
5 C6 C5 C C doub 1.38 N Y
6 C3 O3 C O sing 1.36 N N
7 C3 C4 C C doub 1.4 N Y
8 C5 C4 C C sing 1.4 N Y
9 C5 C5A C C sing 1.51 N N
10 C4 C4A C C sing 1.48 N N
11 O4P C5A O C sing 1.43 N N
12 O4P P O P sing 1.61 N N
13 C4A N4' C N doub 1.29 N N
14 O1P P O P doub 1.48 N N
15 N4' C4' N C sing 1.47 N N
16 C6' C5' C C sing 1.53 N N
17 P O2P P O sing 1.61 N N
18 P O3P P O sing 1.61 N N
19 C4' C5' C C sing 1.53 N N
20 C4' C3' C C sing 1.53 N N
21 O3' C3' O C sing 1.43 N N
22 C5' O5' C O sing 1.43 N N
23 C3' C2' C C sing 1.53 N N
24 O5' C1' O C sing 1.43 N N
25 C2' C1' C C sing 1.53 N N
26 C2' N2' C N sing 1.47 N N
27 C1' O1' C O sing 1.43 N N
28 O7' C7' O C doub 1.21 N N
29 O2' C2B O C sing 1.43 N N
30 N2' C7' N C sing 1.35 N N
31 O1' PB O P sing 1.61 N N
32 C7' C8' C C sing 1.51 N N
33 O3B C3B O C sing 1.43 N N
34 C2B C3B C C sing 1.55 N N
35 C2B C1B C C sing 1.54 N N
36 O2B PB O P doub 1.48 N N
37 C3B C4B C C sing 1.55 N N
38 PB O3A P O sing 1.61 N N
39 PB O1B P O sing 1.61 N N
40 O2A PA O P doub 1.48 N N
41 O3A PA O P sing 1.61 N N
42 O2C C2C O C doub 1.21 N N
43 C1B N1C C N sing 1.46 N N
44 C1B O4B C O sing 1.44 N N
45 C2C N1C C N sing 1.35 N N
46 C2C N3C C N sing 1.35 N N
47 N1C C6C N C sing 1.37 N N
48 PA O5B P O sing 1.61 N N
49 PA O1A P O sing 1.61 N N
50 N3C C4C N C sing 1.35 N N
51 C4B O4B C O sing 1.44 N N
52 C4B C5B C C sing 1.53 N N
53 C6C C5C C C doub 1.35 N N
54 O5B C5B O C sing 1.43 N N
55 C4C C5C C C sing 1.42 N N
56 C4C O4C C O doub 1.22 N N
57 O3 H1 O H sing 0.97 N N
58 C6 H2 C H sing 1.08 N N
59 N3C H3 N H sing 0.97 N N
60 C5C H4 C H sing 1.08 N N
61 C6C H5 C H sing 1.08 N N
62 C1B H6 C H sing 1.09 N N
63 C2B H7 C H sing 1.09 N N
64 O2' H8 O H sing 0.97 N N
65 C3B H9 C H sing 1.09 N N
66 O3B H10 O H sing 0.97 N N
67 C4B H11 C H sing 1.09 N N
68 C5B H12 C H sing 1.09 N N
69 C5B H13 C H sing 1.09 N N
70 O1A H14 O H sing 0.97 N N
71 O1B H15 O H sing 0.97 N N
72 C1' H16 C H sing 1.09 N N
73 C2' H17 C H sing 1.09 N N
74 N2' H18 N H sing 0.97 N N
75 C8' H19 C H sing 1.09 N N
76 C8' H20 C H sing 1.09 N N
77 C8' H21 C H sing 1.09 N N
78 C3' H22 C H sing 1.09 N N
79 O3' H23 O H sing 0.97 N N
80 C4' H24 C H sing 1.09 N N
81 C5' H25 C H sing 1.09 N N
82 C6' H26 C H sing 1.09 N N
83 C6' H27 C H sing 1.09 N N
84 C6' H28 C H sing 1.09 N N
85 C4A H29 C H sing 1.08 N N
86 C2A H30 C H sing 1.09 N N
87 C2A H31 C H sing 1.09 N N
88 C2A H32 C H sing 1.09 N N
89 C5A H33 C H sing 1.09 N N
90 C5A H34 C H sing 1.09 N N
91 O3P H35 O H sing 0.97 N N
92 O2P H36 O H sing 0.97 N N