Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 4RA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 89


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 O2C O O1 N N N 0 -6.441 -4.331 -1.743
2 O3 O O2 N N N 0 2.669 -2.415 -0.115
3 C2 C C1 N Y N 0 4.189 -4.242 -0.307
4 C3 C C2 N Y N 0 3.942 -2.883 -0.167
5 C4 C C3 N Y N 0 5.031 -2.002 -0.081
6 C5 C C4 N Y N 0 6.322 -2.541 -0.14
7 C6 C C5 N Y N 0 6.472 -3.905 -0.28
8 C2C C C6 N N N 0 -6.925 -4.203 -0.636
9 N3C N N1 N N N 0 -7.161 -5.295 0.115
10 C4C C C7 N N N 0 -7.697 -5.171 1.346
11 O4C O O3 N N N 0 -7.911 -6.159 2.026
12 C5C C C8 N N N 0 -8.01 -3.882 1.841
13 C6C C C9 N N N 0 -7.763 -2.804 1.067
14 N1C N N2 N N N 0 -7.213 -2.972 -0.175
15 C1B C C10 R N N 0 -6.94 -1.802 -1.013
16 C2B C C11 R N N 0 -8.251 -1.05 -1.33
17 O2' O O4 N N N 0 -8.736 -1.412 -2.625
18 C3B C C12 S N N 0 -7.846 0.441 -1.301
19 O3B O O5 N N N 0 -8.067 1.045 -2.577
20 O4B O O6 N N N 0 -6.131 -0.846 -0.293
21 C4B C C13 R N N 0 -6.337 0.413 -0.97
22 C5B C C14 N N N 0 -5.972 1.579 -0.049
23 O5B O O7 N N N 0 -4.557 1.603 0.151
24 PA P P1 N N N 0 -3.82 2.702 1.069
25 O1A O O8 N N N 0 -4.282 2.518 2.601
26 O2A O O9 N N N 0 -4.185 4.058 0.604
27 O3A O O10 N N N 0 -2.226 2.508 0.962
28 PB P P2 N N N 0 -0.959 3.419 1.358
29 O2B O O11 N N N 0 -1.241 4.831 1.015
30 O1B O O12 N N N 0 -0.683 3.296 2.94
31 O1' O O13 N N N 0 0.338 2.918 0.546
32 C1' C C15 R N N 0 1.598 3.59 0.6
33 C2' C C16 R N N 0 2.339 3.393 -0.724
34 N2' N N3 N N N 0 1.513 3.892 -1.827
35 C7' C C17 N N N 0 1.543 5.199 -2.153
36 C8' C C18 N N N 0 0.694 5.713 -3.287
37 O7' O O14 N N N 0 2.255 5.962 -1.535
38 C3' C C19 S N N 0 2.617 1.9 -0.928
39 O3' O O15 N N N 0 3.371 1.714 -2.127
40 C4' C C20 S N N 0 3.414 1.373 0.269
41 C5' C C21 R N N 0 2.632 1.648 1.555
42 C6' C C22 N N N 0 3.449 1.178 2.76
43 O5' O O16 N N N 0 2.38 3.05 1.668
44 N4' N N4 N N N 0 3.622 -0.07 0.121
45 C4A C C23 N N N 0 4.822 -0.548 0.068
46 C2A C C24 N N N 0 3.032 -5.203 -0.401
47 N1 N N5 N Y N 0 5.422 -4.701 -0.363
48 C5A C C25 N N N 0 7.53 -1.645 -0.053
49 O4P O O17 N N N 0 8.717 -2.436 -0.138
50 P P P3 N N N 0 10.197 -1.805 -0.078
51 O3P O O18 N N N 0 10.433 -0.868 -1.367
52 O1P O O19 N N N 0 10.34 -0.995 1.153
53 O2P O O20 N N N 0 11.286 -2.99 -0.07
54 H1 H H1 N N N 0 2.303 -2.369 0.778
55 H2 H H2 N N N 0 7.464 -4.329 -0.327
56 H3 H H3 N N N 0 -6.944 -6.175 -0.231
57 H4 H H4 N N N 0 -8.44 -3.763 2.824
58 H5 H H5 N N N 0 -7.995 -1.812 1.427
59 H6 H H6 N N N 0 -6.441 -2.104 -1.934
60 H7 H H7 N N N 0 -9.003 -1.256 -0.568
61 H8 H H8 N N N 0 -9.524 -0.925 -2.9
62 H9 H H9 N N N 0 -8.397 0.972 -0.525
63 H10 H H10 N N N 0 -8.991 1.035 -2.862
64 H11 H H11 N N N 0 -5.747 0.452 -1.885
65 H12 H H12 N N N 0 -6.291 2.516 -0.505
66 H13 H H13 N N N 0 -6.473 1.454 0.911
67 H14 H H14 N N N 0 -4.074 1.649 2.972
68 H15 H H15 N N N 0 -0.491 2.396 3.236
69 H16 H H16 N N N 0 1.435 4.654 0.771
70 H17 H H17 N N N 0 3.282 3.94 -0.699
71 H18 H H18 N N N 0 0.944 3.282 -2.321
72 H19 H H19 N N N 0 -0.357 5.52 -3.07
73 H20 H H20 N N N 0 0.85 6.785 -3.402
74 H21 H H21 N N N 0 0.973 5.204 -4.21
75 H22 H H22 N N N 0 1.673 1.361 -1.003
76 H23 H H23 N N N 0 3.583 0.79 -2.319
77 H24 H H24 N N N 0 4.379 1.878 0.314
78 H25 H H25 N N N 0 1.684 1.11 1.526
79 H26 H H26 N N N 0 4.396 1.717 2.789
80 H27 H H27 N N N 0 2.891 1.374 3.676
81 H28 H H28 N N N 0 3.641 0.109 2.674
82 H29 H H29 N N N 0 5.672 0.116 0.133
83 H30 H H30 N N N 0 2.75 -5.33 -1.446
84 H31 H H31 N N N 0 3.325 -6.167 0.016
85 H32 H H32 N N N 0 2.185 -4.808 0.159
86 H33 H H33 N N N 0 7.511 -0.929 -0.874
87 H34 H H34 N N N 0 7.517 -1.109 0.896
88 H35 H H35 N N N 0 10.355 -1.334 -2.211
89 H36 H H36 N N N 0 12.202 -2.683 -0.035