Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 49X    

Bonds between two atoms of the molecule

Total Number of Bonds: 116


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CBB CBA C C sing 1.53 N N
2 CBA CAZ C C sing 1.53 N N
3 CAZ CAY C C sing 1.53 N N
4 OBL CAM O C sing 1.43 N N
5 C1 OG C O sing 1.43 N N
6 C1 CG2 C C sing 1.53 N N
7 C1 CAH C C sing 1.51 N N
8 OG3 CG2 O C sing 1.43 N N
9 OG CG O C sing 1.43 N N
10 CG2 CG3 C C sing 1.53 N N
11 OBN CAN O C sing 1.43 N N
12 CAH CAK C C doub 1.31 E N
13 CAY CAX C C sing 1.53 N N
14 CAK CAL C C sing 1.51 N N
15 CAM CAN C C sing 1.53 N N
16 CAM CAL C C sing 1.53 N N
17 CAN CAO C C sing 1.53 N N
18 CAX CAW C C sing 1.53 N N
19 CAL NBC C N sing 1.47 N N
20 CG CG5 C C sing 1.53 N N
21 CG CG4 C C sing 1.53 N N
22 OG5 CG4 O C sing 1.43 N N
23 CG3 OG4 C O sing 1.43 N N
24 CG3 CG4 C C sing 1.53 N N
25 CG5 OG6 C O sing 1.43 N N
26 CAW CAV C C sing 1.53 N N
27 CAO CAP C C sing 1.53 N N
28 CAP CAQ C C sing 1.53 N N
29 NBC CBD N C sing 1.35 N N
30 CAT CAS C C sing 1.53 N N
31 CAT CAU C C sing 1.53 N N
32 OBM CBD O C doub 1.21 N N
33 CAV CAU C C sing 1.53 N N
34 CAS CAR C C sing 1.53 N N
35 CBD CBE C C sing 1.51 N N
36 CAR CAQ C C sing 1.53 N N
37 CBE CBF C C sing 1.53 N N
38 CBF CBG C C sing 1.53 N N
39 CBH CBG C C sing 1.53 N N
40 CBH CBI C C sing 1.53 N N
41 CBJ CBI C C sing 1.53 N N
42 CBJ CBK C C sing 1.53 N N
43 CBR CBS C C doub 1.38 N Y
44 CBR CBO C C sing 1.38 N Y
45 CBS CBT C C sing 1.38 N Y
46 CBK CBO C C sing 1.51 N N
47 CBO CBV C C doub 1.38 N Y
48 CBT CBU C C doub 1.38 N Y
49 CBV CBU C C sing 1.38 N Y
50 C1 H1 C H sing 1.09 N N
51 CBB H2 C H sing 1.09 N N
52 CBB H3 C H sing 1.09 N N
53 CBB H4 C H sing 1.09 N N
54 CBA H5 C H sing 1.09 N N
55 CBA H6 C H sing 1.09 N N
56 CAZ H7 C H sing 1.09 N N
57 CAZ H8 C H sing 1.09 N N
58 CAY H9 C H sing 1.09 N N
59 CAY H10 C H sing 1.09 N N
60 CAX H11 C H sing 1.09 N N
61 CAX H12 C H sing 1.09 N N
62 CAW H13 C H sing 1.09 N N
63 CAW H14 C H sing 1.09 N N
64 CAV H15 C H sing 1.09 N N
65 CAV H16 C H sing 1.09 N N
66 CAU H17 C H sing 1.09 N N
67 CAU H18 C H sing 1.09 N N
68 CAT H19 C H sing 1.09 N N
69 CAT H20 C H sing 1.09 N N
70 CAS H21 C H sing 1.09 N N
71 CAS H22 C H sing 1.09 N N
72 CAR H23 C H sing 1.09 N N
73 CAR H24 C H sing 1.09 N N
74 CAQ H25 C H sing 1.09 N N
75 CAQ H26 C H sing 1.09 N N
76 CAP H27 C H sing 1.09 N N
77 CAP H28 C H sing 1.09 N N
78 CAO H29 C H sing 1.09 N N
79 CAO H30 C H sing 1.09 N N
80 CAN H31 C H sing 1.09 N N
81 OBN H32 O H sing 0.97 N N
82 CAM H33 C H sing 1.09 N N
83 OBL H34 O H sing 0.97 N N
84 CAL H35 C H sing 1.09 N N
85 CAK H36 C H sing 1.08 N N
86 CAH H37 C H sing 1.08 N N
87 CG H38 C H sing 1.09 N N
88 CG5 H39 C H sing 1.09 N N
89 CG5 H40 C H sing 1.09 N N
90 OG6 H41 O H sing 0.97 N N
91 CG4 H42 C H sing 1.09 N N
92 OG5 H43 O H sing 0.97 N N
93 CG3 H44 C H sing 1.09 N N
94 OG4 H45 O H sing 0.97 N N
95 CG2 H46 C H sing 1.09 N N
96 OG3 H47 O H sing 0.97 N N
97 NBC H48 N H sing 0.97 N N
98 CBE H49 C H sing 1.09 N N
99 CBE H50 C H sing 1.09 N N
100 CBF H51 C H sing 1.09 N N
101 CBF H52 C H sing 1.09 N N
102 CBG H53 C H sing 1.09 N N
103 CBG H54 C H sing 1.09 N N
104 CBH H55 C H sing 1.09 N N
105 CBH H56 C H sing 1.09 N N
106 CBI H57 C H sing 1.09 N N
107 CBI H58 C H sing 1.09 N N
108 CBJ H59 C H sing 1.09 N N
109 CBJ H60 C H sing 1.09 N N
110 CBK H61 C H sing 1.09 N N
111 CBK H62 C H sing 1.09 N N
112 CBR H63 C H sing 1.08 N N
113 CBS H64 C H sing 1.08 N N
114 CBT H65 C H sing 1.08 N N
115 CBU H66 C H sing 1.08 N N
116 CBV H67 C H sing 1.08 N N