data_49X
#
_chem_comp.id 49X
_chem_comp.name
(1R)-1,5-anhydro-1-{(1E,3S,4S,5R)-4,5-dihydroxy-3-[(8-phenyloctanoyl)amino]nonadec-1-en-1-yl}-D-galactitol
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C39 H67 N O8"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms GCK152
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2015-02-18
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 677.951
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 49X
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4Y4H
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
49X C1 C1 C 0 1 N N R N N N 3.423 -1.305 18.782 1.232 3.343 0.787 C1 49X 1
49X CBB C2 C 0 1 N N N N N N 15.199 10.291 15.675 -19.610 -1.392 0.715 CBB 49X 2
49X CBA C3 C 0 1 N N N N N N 15.289 9.582 17.043 -18.378 -1.575 -0.175 CBA 49X 3
49X CAZ C4 C 0 1 N N N N N N 14.309 10.202 18.054 -17.115 -1.273 0.634 CAZ 49X 4
49X CAY C5 C 0 1 N N N N N N 14.637 9.800 19.492 -15.884 -1.455 -0.256 CAY 49X 5
49X CAX C6 C 0 1 N N N N N N 13.362 9.330 20.179 -14.621 -1.153 0.553 CAX 49X 6
49X CAW C7 C 0 1 N N N N N N 13.583 8.032 20.933 -13.389 -1.335 -0.336 CAW 49X 7
49X CAV C8 C 0 1 N N N N N N 12.930 8.154 22.292 -12.127 -1.033 0.473 CAV 49X 8
49X CAU C9 C 0 1 N N N N N N 12.427 6.800 22.749 -10.895 -1.216 -0.417 CAU 49X 9
49X CAT C10 C 0 1 N N N N N N 12.863 5.679 21.801 -9.632 -0.914 0.392 CAT 49X 10
49X CAS C11 C 0 1 N N N N N N 12.384 4.315 22.324 -8.401 -1.096 -0.498 CAS 49X 11
49X CAR C12 C 0 1 N N N N N N 10.934 4.384 22.834 -7.138 -0.794 0.311 CAR 49X 12
49X CAQ C13 C 0 1 N N N N N N 10.288 3.004 22.916 -5.907 -0.976 -0.578 CAQ 49X 13
49X CAP C14 C 0 1 N N N N N N 9.893 2.541 21.528 -4.644 -0.674 0.231 CAP 49X 14
49X CAO C15 C 0 1 N N N N N N 8.451 2.080 21.503 -3.412 -0.857 -0.659 CAO 49X 15
49X CAN C16 C 0 1 N N R N N N 8.041 1.976 20.039 -2.149 -0.555 0.150 CAN 49X 16
49X OBN O1 O 0 1 N N N N N N 9.056 1.360 19.242 -2.009 -1.522 1.193 OBN 49X 17
49X CAM C17 C 0 1 N N S N N N 6.793 1.175 19.817 -0.928 -0.615 -0.769 CAM 49X 18
49X OBL O2 O 0 1 N N N N N N 6.668 1.236 18.411 -1.068 0.352 -1.812 OBL 49X 19
49X CAL C18 C 0 1 N N S N N N 6.870 -0.309 20.268 0.335 -0.313 0.040 CAL 49X 20
49X CAK C19 C 0 1 N N N N N N 5.799 -1.162 19.546 0.283 1.107 0.540 CAK 49X 21
49X CAH C20 C 0 1 N N N N N N 4.481 -0.686 19.476 1.215 1.959 0.191 CAH 49X 22
49X OG O3 O 0 1 N N N N N N 3.257 -2.732 18.963 2.407 3.505 1.584 OG 49X 23
49X CG C21 C 0 1 N N R N N N 3.158 -2.987 20.392 3.629 3.318 0.866 CG 49X 24
49X CG5 C22 C 0 1 N N N N N N 3.455 -4.457 20.639 4.812 3.487 1.821 CG5 49X 25
49X OG6 O4 O 0 1 N N N N N N 2.689 -4.811 21.755 4.786 2.447 2.800 OG6 49X 26
49X CG4 C23 C 0 1 N N R N N N 1.836 -2.393 20.960 3.725 4.357 -0.255 CG4 49X 27
49X OG5 O5 O 0 1 N N N N N N 0.709 -3.113 20.459 3.754 5.668 0.311 OG5 49X 28
49X CG3 C24 C 0 1 N N R N N N 1.710 -0.895 20.632 2.506 4.221 -1.172 CG3 49X 29
49X OG4 O6 O 0 1 N N N N N N 0.374 -0.490 20.941 2.549 5.234 -2.179 OG4 49X 30
49X CG2 C25 C 0 1 N N R N N N 2.092 -0.606 19.154 1.232 4.383 -0.337 CG2 49X 31
49X OG3 O7 O 0 1 N N N N N N 2.210 0.797 18.850 0.087 4.186 -1.169 OG3 49X 32
49X NBC N1 N 0 1 N N N N N N 6.681 -0.391 21.721 1.514 -0.488 -0.812 NBC 49X 33
49X CBD C26 C 0 1 N N N N N N 6.961 -1.498 22.405 2.709 -0.776 -0.259 CBD 49X 34
49X OBM O8 O 0 1 N N N N N N 7.341 -2.558 21.893 2.808 -0.890 0.945 OBM 49X 35
49X CBE C27 C 0 1 N N N N N N 6.742 -1.382 23.910 3.921 -0.956 -1.135 CBE 49X 36
49X CBF C28 C 0 1 N N N N N N 7.928 -1.949 24.676 5.138 -1.273 -0.263 CBF 49X 37
49X CBG C29 C 0 1 N N N N N N 8.300 -1.034 25.859 6.369 -1.456 -1.153 CBG 49X 38
49X CBH C30 C 0 1 N N N N N N 9.614 -0.286 25.598 7.586 -1.773 -0.281 CBH 49X 39
49X CBI C31 C 0 1 N N N N N N 10.560 -0.286 26.803 8.817 -1.955 -1.171 CBI 49X 40
49X CBJ C32 C 0 1 N N N N N N 11.988 0.025 26.370 10.034 -2.273 -0.299 CBJ 49X 41
49X CBK C33 C 0 1 N N N N N N 12.780 0.765 27.449 11.265 -2.455 -1.188 CBK 49X 42
49X CBO C34 C 0 1 Y N N N N N 14.219 0.206 27.604 12.463 -2.768 -0.329 CBO 49X 43
49X CBR C35 C 0 1 Y N N N N N 14.629 -0.972 26.958 13.249 -1.742 0.161 CBR 49X 44
49X CBS C36 C 0 1 Y N N N N N 15.929 -1.473 27.111 14.348 -2.028 0.948 CBS 49X 45
49X CBT C37 C 0 1 Y N N N N N 16.835 -0.788 27.914 14.661 -3.341 1.246 CBT 49X 46
49X CBU C38 C 0 1 Y N N N N N 16.438 0.385 28.559 13.875 -4.368 0.757 CBU 49X 47
49X CBV C39 C 0 1 Y N N N N N 15.142 0.881 28.407 12.774 -4.081 -0.027 CBV 49X 48
49X H1 H1 H 0 1 N N N N N N 3.574 -1.126 17.707 0.348 3.482 1.410 H1 49X 49
49X H2 H2 H 0 1 N N N N N N 15.909 9.828 14.974 -20.509 -1.607 0.138 H2 49X 50
49X H3 H3 H 0 1 N N N N N N 14.177 10.195 15.279 -19.549 -2.074 1.562 H3 49X 51
49X H4 H4 H 0 1 N N N N N N 15.446 11.356 15.797 -19.647 -0.365 1.077 H4 49X 52
49X H5 H5 H 0 1 N N N N N N 15.045 8.517 16.913 -18.341 -2.602 -0.537 H5 49X 53
49X H6 H6 H 0 1 N N N N N N 16.314 9.678 17.431 -18.438 -0.892 -1.023 H6 49X 54
49X H7 H7 H 0 1 N N N N N N 14.360 11.298 17.971 -17.153 -0.245 0.996 H7 49X 55
49X H8 H8 H 0 1 N N N N N N 13.290 9.863 17.814 -17.055 -1.955 1.482 H8 49X 56
49X H9 H9 H 0 1 N N N N N N 15.375 8.985 19.488 -15.846 -2.482 -0.618 H9 49X 57
49X H10 H10 H 0 1 N N N N N N 15.049 10.665 20.032 -15.944 -0.773 -1.104 H10 49X 58
49X H11 H11 H 0 1 N N N N N N 13.032 10.104 20.888 -14.658 -0.125 0.915 H11 49X 59
49X H12 H12 H 0 1 N N N N N N 12.583 9.173 19.418 -14.561 -1.835 1.401 H12 49X 60
49X H13 H13 H 0 1 N N N N N N 13.131 7.197 20.377 -13.352 -2.363 -0.698 H13 49X 61
49X H14 H14 H 0 1 N N N N N N 14.661 7.851 21.054 -13.450 -0.653 -1.184 H14 49X 62
49X H15 H15 H 0 1 N N N N N N 13.666 8.533 23.017 -12.164 -0.006 0.835 H15 49X 63
49X H16 H16 H 0 1 N N N N N N 12.084 8.854 22.228 -12.066 -1.715 1.321 H16 49X 64
49X H17 H17 H 0 1 N N N N N N 11.328 6.824 22.790 -10.858 -2.243 -0.779 H17 49X 65
49X H18 H18 H 0 1 N N N N N N 12.827 6.592 23.753 -10.955 -0.534 -1.265 H18 49X 66
49X H19 H19 H 0 1 N N N N N N 13.961 5.673 21.728 -9.670 0.114 0.754 H19 49X 67
49X H20 H20 H 0 1 N N N N N N 12.430 5.858 20.806 -9.572 -1.596 1.240 H20 49X 68
49X H21 H21 H 0 1 N N N N N N 12.441 3.579 21.508 -8.363 -2.123 -0.860 H21 49X 69
49X H22 H22 H 0 1 N N N N N N 13.039 3.999 23.150 -8.461 -0.414 -1.346 H22 49X 70
49X H23 H23 H 0 1 N N N N N N 10.932 4.837 23.836 -7.175 0.234 0.674 H23 49X 71
49X H24 H24 H 0 1 N N N N N N 10.346 5.011 22.147 -7.078 -1.476 1.159 H24 49X 72
49X H25 H25 H 0 1 N N N N N N 9.392 3.057 23.552 -5.869 -2.004 -0.940 H25 49X 73
49X H26 H26 H 0 1 N N N N N N 11.004 2.290 23.349 -5.967 -0.294 -1.426 H26 49X 74
49X H27 H27 H 0 1 N N N N N N 10.543 1.706 21.228 -4.681 0.353 0.593 H27 49X 75
49X H28 H28 H 0 1 N N N N N N 10.017 3.375 20.821 -4.583 -1.356 1.079 H28 49X 76
49X H29 H29 H 0 1 N N N N N N 7.812 2.809 22.023 -3.375 -1.884 -1.021 H29 49X 77
49X H30 H30 H 0 1 N N N N N N 8.360 1.099 21.991 -3.472 -0.175 -1.507 H30 49X 78
49X H31 H31 H 0 1 N N N N N N 7.863 2.996 19.667 -2.227 0.441 0.586 H31 49X 79
49X H32 H32 H 0 1 N N N N N N 9.873 1.833 19.348 -1.934 -2.432 0.877 H32 49X 80
49X H33 H33 H 0 1 N N N N N N 5.941 1.661 20.314 -0.851 -1.611 -1.205 H33 49X 81
49X H34 H34 H 0 1 N N N N N N 5.896 0.754 18.140 -1.143 1.263 -1.497 H34 49X 82
49X H35 H35 H 0 1 N N N N N N 7.863 -0.701 20.004 0.395 -0.995 0.888 H35 49X 83
49X H36 H36 H 0 1 N N N N N N 6.063 -2.111 19.102 -0.522 1.423 1.187 H36 49X 84
49X H37 H37 H 0 1 N N N N N N 4.259 0.233 19.998 1.972 1.670 -0.523 H37 49X 85
49X H38 H38 H 0 1 N N N N N N 3.971 -2.425 20.875 3.648 2.316 0.437 H38 49X 86
49X H39 H39 H 0 1 N N N N N N 3.164 -5.060 19.766 5.744 3.432 1.258 H39 49X 87
49X H40 H40 H 0 1 N N N N N N 4.525 -4.603 20.845 4.744 4.455 2.317 H40 49X 88
49X H41 H41 H 0 1 N N N N N N 2.833 -5.727 21.961 5.509 2.491 3.441 H41 49X 89
49X H42 H42 H 0 1 N N N N N N 1.871 -2.494 22.055 4.635 4.188 -0.831 H42 49X 90
49X H43 H43 H 0 1 N N N N N N -0.089 -2.740 20.814 3.815 6.378 -0.343 H43 49X 91
49X H44 H44 H 0 1 N N N N N N 2.415 -0.347 21.274 2.511 3.238 -1.643 H44 49X 92
49X H45 H45 H 0 1 N N N N N N 0.186 -0.686 21.851 1.806 5.207 -2.796 H45 49X 93
49X H46 H46 H 0 1 N N N N N N 1.304 -1.040 18.521 1.203 5.384 0.093 H46 49X 94
49X H47 H47 H 0 1 N N N N N N 1.399 1.239 19.073 -0.757 4.269 -0.704 H47 49X 95
49X H48 H48 H 0 1 N N N N N N 6.332 0.408 22.211 1.435 -0.396 -1.775 H48 49X 96
49X H49 H49 H 0 1 N N N N N N 6.616 -0.322 24.175 3.749 -1.777 -1.830 H49 49X 97
49X H50 H50 H 0 1 N N N N N N 5.835 -1.940 24.186 4.105 -0.038 -1.694 H50 49X 98
49X H51 H51 H 0 1 N N N N N N 7.667 -2.946 25.059 5.311 -0.452 0.433 H51 49X 99
49X H52 H52 H 0 1 N N N N N N 8.790 -2.031 23.998 4.955 -2.190 0.296 H52 49X 100
49X H53 H53 H 0 1 N N N N N N 7.495 -0.300 26.011 6.197 -2.277 -1.848 H53 49X 101
49X H54 H54 H 0 1 N N N N N N 8.412 -1.648 26.765 6.553 -0.538 -1.712 H54 49X 102
49X H55 H55 H 0 1 N N N N N N 10.127 -0.766 24.751 7.759 -0.952 0.415 H55 49X 103
49X H56 H56 H 0 1 N N N N N N 9.377 0.757 25.340 7.403 -2.690 0.278 H56 49X 104
49X H57 H57 H 0 1 N N N N N N 10.227 0.476 27.523 8.644 -2.777 -1.866 H57 49X 105
49X H58 H58 H 0 1 N N N N N N 10.536 -1.277 27.281 9.000 -1.038 -1.730 H58 49X 106
49X H59 H59 H 0 1 N N N N N N 12.501 -0.921 26.142 10.207 -1.452 0.397 H59 49X 107
49X H60 H60 H 0 1 N N N N N N 11.954 0.651 25.466 9.851 -3.190 0.261 H60 49X 108
49X H61 H61 H 0 1 N N N N N N 12.840 1.829 27.177 11.092 -3.277 -1.884 H61 49X 109
49X H62 H62 H 0 1 N N N N N N 12.254 0.661 28.409 11.448 -1.538 -1.748 H62 49X 110
49X H63 H63 H 0 1 N N N N N N 13.928 -1.503 26.331 13.005 -0.716 -0.072 H63 49X 111
49X H64 H64 H 0 1 N N N N N N 16.225 -2.383 26.610 14.963 -1.227 1.331 H64 49X 112
49X H65 H65 H 0 1 N N N N N N 17.841 -1.162 28.038 15.521 -3.566 1.861 H65 49X 113
49X H66 H66 H 0 1 N N N N N N 17.142 0.915 29.183 14.120 -5.393 0.989 H66 49X 114
49X H67 H67 H 0 1 N N N N N N 14.852 1.790 28.912 12.157 -4.882 -0.407 H67 49X 115
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
49X CBB CBA SING N N 1
49X CBA CAZ SING N N 2
49X CAZ CAY SING N N 3
49X OBL CAM SING N N 4
49X C1 OG SING N N 5
49X C1 CG2 SING N N 6
49X C1 CAH SING N N 7
49X OG3 CG2 SING N N 8
49X OG CG SING N N 9
49X CG2 CG3 SING N N 10
49X OBN CAN SING N N 11
49X CAH CAK DOUB N E 12
49X CAY CAX SING N N 13
49X CAK CAL SING N N 14
49X CAM CAN SING N N 15
49X CAM CAL SING N N 16
49X CAN CAO SING N N 17
49X CAX CAW SING N N 18
49X CAL NBC SING N N 19
49X CG CG5 SING N N 20
49X CG CG4 SING N N 21
49X OG5 CG4 SING N N 22
49X CG3 OG4 SING N N 23
49X CG3 CG4 SING N N 24
49X CG5 OG6 SING N N 25
49X CAW CAV SING N N 26
49X CAO CAP SING N N 27
49X CAP CAQ SING N N 28
49X NBC CBD SING N N 29
49X CAT CAS SING N N 30
49X CAT CAU SING N N 31
49X OBM CBD DOUB N N 32
49X CAV CAU SING N N 33
49X CAS CAR SING N N 34
49X CBD CBE SING N N 35
49X CAR CAQ SING N N 36
49X CBE CBF SING N N 37
49X CBF CBG SING N N 38
49X CBH CBG SING N N 39
49X CBH CBI SING N N 40
49X CBJ CBI SING N N 41
49X CBJ CBK SING N N 42
49X CBR CBS DOUB Y N 43
49X CBR CBO SING Y N 44
49X CBS CBT SING Y N 45
49X CBK CBO SING N N 46
49X CBO CBV DOUB Y N 47
49X CBT CBU DOUB Y N 48
49X CBV CBU SING Y N 49
49X C1 H1 SING N N 50
49X CBB H2 SING N N 51
49X CBB H3 SING N N 52
49X CBB H4 SING N N 53
49X CBA H5 SING N N 54
49X CBA H6 SING N N 55
49X CAZ H7 SING N N 56
49X CAZ H8 SING N N 57
49X CAY H9 SING N N 58
49X CAY H10 SING N N 59
49X CAX H11 SING N N 60
49X CAX H12 SING N N 61
49X CAW H13 SING N N 62
49X CAW H14 SING N N 63
49X CAV H15 SING N N 64
49X CAV H16 SING N N 65
49X CAU H17 SING N N 66
49X CAU H18 SING N N 67
49X CAT H19 SING N N 68
49X CAT H20 SING N N 69
49X CAS H21 SING N N 70
49X CAS H22 SING N N 71
49X CAR H23 SING N N 72
49X CAR H24 SING N N 73
49X CAQ H25 SING N N 74
49X CAQ H26 SING N N 75
49X CAP H27 SING N N 76
49X CAP H28 SING N N 77
49X CAO H29 SING N N 78
49X CAO H30 SING N N 79
49X CAN H31 SING N N 80
49X OBN H32 SING N N 81
49X CAM H33 SING N N 82
49X OBL H34 SING N N 83
49X CAL H35 SING N N 84
49X CAK H36 SING N N 85
49X CAH H37 SING N N 86
49X CG H38 SING N N 87
49X CG5 H39 SING N N 88
49X CG5 H40 SING N N 89
49X OG6 H41 SING N N 90
49X CG4 H42 SING N N 91
49X OG5 H43 SING N N 92
49X CG3 H44 SING N N 93
49X OG4 H45 SING N N 94
49X CG2 H46 SING N N 95
49X OG3 H47 SING N N 96
49X NBC H48 SING N N 97
49X CBE H49 SING N N 98
49X CBE H50 SING N N 99
49X CBF H51 SING N N 100
49X CBF H52 SING N N 101
49X CBG H53 SING N N 102
49X CBG H54 SING N N 103
49X CBH H55 SING N N 104
49X CBH H56 SING N N 105
49X CBI H57 SING N N 106
49X CBI H58 SING N N 107
49X CBJ H59 SING N N 108
49X CBJ H60 SING N N 109
49X CBK H61 SING N N 110
49X CBK H62 SING N N 111
49X CBR H63 SING N N 112
49X CBS H64 SING N N 113
49X CBT H65 SING N N 114
49X CBU H66 SING N N 115
49X CBV H67 SING N N 116
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
49X SMILES ACDLabs 12.01 O=C(NC(/C=C/C1OC(CO)C(O)C(O)C1O)C(O)C(O)CCCCCCCCCCCCCC)CCCCCCCc2ccccc2
49X InChI InChI 1.03 InChI=1S/C39H67NO8/c1-2-3-4-5-6-7-8-9-10-11-14-20-25-32(42)36(44)31(27-28-33-37(45)39(47)38(46)34(29-41)48-33)40-35(43)26-21-15-12-13-17-22-30-23-18-16-19-24-30/h16,18-19,23-24,27-28,31-34,36-39,41-42,44-47H,2-15,17,20-22,25-26,29H2,1H3,(H,40,43)/b28-27+/t31-,32+,33+,34+,36-,37-,38-,39+/m0/s1
49X InChIKey InChI 1.03 RWGUVAAXYHWJFZ-CSYYKWSVSA-N
49X SMILES_CANONICAL CACTVS 3.385 CCCCCCCCCCCCCC[C@@H](O)[C@@H](O)[C@@H](NC(=O)CCCCCCCc1ccccc1)/C=C/[C@H]2O[C@H](CO)[C@H](O)[C@H](O)[C@H]2O
49X SMILES CACTVS 3.385 CCCCCCCCCCCCCC[CH](O)[CH](O)[CH](NC(=O)CCCCCCCc1ccccc1)C=C[CH]2O[CH](CO)[CH](O)[CH](O)[CH]2O
49X SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 CCCCCCCCCCCCCC[C@H]([C@H]([C@H](/C=C/[C@@H]1[C@@H]([C@H]([C@H]([C@H](O1)CO)O)O)O)NC(=O)CCCCCCCc2ccccc2)O)O
49X SMILES "OpenEye OEToolkits" 1.9.2 CCCCCCCCCCCCCCC(C(C(C=CC1C(C(C(C(O1)CO)O)O)O)NC(=O)CCCCCCCc2ccccc2)O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
49X "SYSTEMATIC NAME" ACDLabs 12.01 (1R)-1,5-anhydro-1-{(1E,3S,4S,5R)-4,5-dihydroxy-3-[(8-phenyloctanoyl)amino]nonadec-1-en-1-yl}-D-galactitol
49X "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 N-[(E,3S,4S,5R)-1-[(2R,3R,4R,5R,6R)-6-(hydroxymethyl)-3,4,5-tris(oxidanyl)oxan-2-yl]-4,5-bis(oxidanyl)nonadec-1-en-3-yl]-8-phenyl-octanamide
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
49X 'Create component' 2015-02-18 RCSB
49X 'Initial release' 2015-05-27 RCSB
49X 'Modify synonyms' 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 49X
_pdbx_chem_comp_synonyms.name GCK152
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbe_chem_comp_synonyms.comp_id 49X
_pdbe_chem_comp_synonyms.name GCK152
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
49X C1 C 9.495 6.518 1
49X CBB C 31.579 2.768 2
49X CBA C 30.280 2.018 3
49X CAZ C 28.981 2.768 4
49X CAY C 27.682 2.018 5
49X CAX C 26.383 2.768 6
49X CAW C 25.084 2.018 7
49X CAV C 23.785 2.768 8
49X CAU C 22.486 2.018 9
49X CAT C 21.187 2.768 10
49X CAS C 19.887 2.018 11
49X CAR C 18.588 2.768 12
49X CAQ C 17.290 2.018 13
49X CAP C 15.990 2.768 14
49X CAO C 14.691 2.018 15
49X CAN C 13.392 2.768 16
49X OBN O 13.392 4.268 17
49X CAM C 12.093 2.018 18
49X OBL O 12.093 0.517 19
49X CAL C 10.794 2.768 20
49X CAK C 10.794 4.268 21
49X CAH C 9.495 5.018 22
49X OG O 10.794 7.268 23
49X CG C 10.794 8.768 24
49X CG5 C 12.093 9.518 25
49X OG6 O 13.392 8.768 26
49X CG4 C 9.495 9.518 27
49X OG5 O 9.495 11.018 28
49X CG3 C 8.196 8.768 29
49X OG4 O 6.897 9.518 30
49X CG2 C 8.196 7.268 31
49X OG3 O 6.897 6.518 32
49X NBC N 9.495 2.018 33
49X CBD C 9.495 0.517 34
49X OBM O 10.794 -0.233 35
49X CBE C 8.196 -0.233 36
49X CBF C 8.196 -1.732 37
49X CBG C 6.897 -2.482 38
49X CBH C 6.897 -3.982 39
49X CBI C 5.598 -4.732 40
49X CBJ C 5.598 -6.232 41
49X CBK C 4.299 -6.982 42
49X CBO C 4.299 -8.482 43
49X CBR C 3.000 -9.232 44
49X CBS C 3.000 -10.732 45
49X CBT C 4.299 -11.482 46
49X CBU C 5.598 -10.732 47
49X CBV C 5.598 -9.232 48
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
49X CBB CBA SINGLE NONE 1
49X CBA CAZ SINGLE NONE 2
49X CAZ CAY SINGLE NONE 3
49X CAM OBL SINGLE BEGINWEDGE 4
49X C1 OG SINGLE NONE 5
49X C1 CG2 SINGLE NONE 6
49X C1 CAH SINGLE BEGINDASH 7
49X CG2 OG3 SINGLE BEGINDASH 8
49X OG CG SINGLE NONE 9
49X CG2 CG3 SINGLE NONE 10
49X CAN OBN SINGLE BEGINDASH 11
49X CAH CAK DOUBLE NONE 12
49X CAY CAX SINGLE NONE 13
49X CAK CAL SINGLE ENDUPRIGHT 14
49X CAM CAN SINGLE NONE 15
49X CAM CAL SINGLE NONE 16
49X CAN CAO SINGLE NONE 17
49X CAX CAW SINGLE NONE 18
49X CAL NBC SINGLE BEGINWEDGE 19
49X CG CG5 SINGLE BEGINWEDGE 20
49X CG CG4 SINGLE NONE 21
49X CG4 OG5 SINGLE BEGINWEDGE 22
49X CG3 OG4 SINGLE BEGINWEDGE 23
49X CG3 CG4 SINGLE NONE 24
49X CG5 OG6 SINGLE NONE 25
49X CAW CAV SINGLE NONE 26
49X CAO CAP SINGLE NONE 27
49X CAP CAQ SINGLE NONE 28
49X NBC CBD SINGLE NONE 29
49X CAT CAS SINGLE NONE 30
49X CAT CAU SINGLE NONE 31
49X OBM CBD DOUBLE NONE 32
49X CAV CAU SINGLE NONE 33
49X CAS CAR SINGLE NONE 34
49X CBD CBE SINGLE NONE 35
49X CAR CAQ SINGLE NONE 36
49X CBE CBF SINGLE NONE 37
49X CBF CBG SINGLE NONE 38
49X CBH CBG SINGLE NONE 39
49X CBH CBI SINGLE NONE 40
49X CBJ CBI SINGLE NONE 41
49X CBJ CBK SINGLE NONE 42
49X CBR CBS DOUBLE NONE 43
49X CBR CBO SINGLE NONE 44
49X CBS CBT SINGLE NONE 45
49X CBK CBO SINGLE NONE 46
49X CBO CBV DOUBLE NONE 47
49X CBT CBU DOUBLE NONE 48
49X CBV CBU SINGLE NONE 49
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
49X MurckoScaffold S1 scaffold 'O=C(CCCCCCCc1ccccc1)NC/C=C/[C@@H]1CCCCO1' InChI=1S/C22H33NO2/c24-22(23-18-11-16-21-15-9-10-19-25-21)17-8-3-1-2-5-12-20-13-6-4-7-14-20/h4,6-7,11,13-14,16,21H,1-3,5,8-10,12,15,17-19H2,(H,23,24)/b16-11+/t21-/m0/s1 IHYPUDOENCPNRF-HZBHDWBUSA-N
49X amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
49X phenyl F2 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
49X C1 S1 1
49X CAL S1 1
49X CAK S1 1
49X CAH S1 1
49X OG S1 1
49X CG S1 1
49X CG4 S1 1
49X CG3 S1 1
49X CG2 S1 1
49X NBC S1 1
49X CBD S1 1
49X OBM S1 1
49X CBE S1 1
49X CBF S1 1
49X CBG S1 1
49X CBH S1 1
49X CBI S1 1
49X CBJ S1 1
49X CBK S1 1
49X CBO S1 1
49X CBR S1 1
49X CBS S1 1
49X CBT S1 1
49X CBU S1 1
49X CBV S1 1
49X NBC F1 1
49X CBD F1 1
49X OBM F1 1
49X CBE F1 1
49X CBO F2 1
49X CBR F2 1
49X CBS F2 1
49X CBT F2 1
49X CBU F2 1
49X CBV F2 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 49X
_pdbe_chem_comp_rdkit_properties.exactmw 677.487
_pdbe_chem_comp_rdkit_properties.amw 677.964
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 9
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 34
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 8
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 48
_pdbe_chem_comp_rdkit_properties.NumAtoms 115
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 9
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.769
_pdbe_chem_comp_rdkit_properties.NumRings 2
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 8
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 384.080
_pdbe_chem_comp_rdkit_properties.tpsa 159.710
_pdbe_chem_comp_rdkit_properties.CrippenClogP 5.211
_pdbe_chem_comp_rdkit_properties.CrippenMR 190.128
_pdbe_chem_comp_rdkit_properties.chi0v 23.213
_pdbe_chem_comp_rdkit_properties.chi1v 11.784
_pdbe_chem_comp_rdkit_properties.chi2v 4.021
_pdbe_chem_comp_rdkit_properties.chi3v 4.021
_pdbe_chem_comp_rdkit_properties.chi4v 2.184
_pdbe_chem_comp_rdkit_properties.chi0n 90.213
_pdbe_chem_comp_rdkit_properties.chi1n 44.681
_pdbe_chem_comp_rdkit_properties.chi2n 4.021
_pdbe_chem_comp_rdkit_properties.chi3n 4.021
_pdbe_chem_comp_rdkit_properties.chi4n 2.184
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.850
_pdbe_chem_comp_rdkit_properties.kappa1 7.220
_pdbe_chem_comp_rdkit_properties.kappa2 26.027
_pdbe_chem_comp_rdkit_properties.kappa3 17.191
_pdbe_chem_comp_rdkit_properties.Phi 3.915
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
49X UniChem ChEBI 77171
49X UniChem ZINC ZINC000096095546
49X UniChem PubChem 73427387
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
49X C1 0.171 6.649 -1.260 ETKDGv3 1
49X CBB -0.222 -9.674 6.707 ETKDGv3 2
49X CBA -0.606 -8.216 6.957 ETKDGv3 3
49X CAZ 0.274 -7.226 6.178 ETKDGv3 4
49X CAY -0.021 -7.237 4.668 ETKDGv3 5
49X CAX 0.830 -6.218 3.893 ETKDGv3 6
49X CAW 0.298 -4.782 4.030 ETKDGv3 7
49X CAV 1.194 -3.746 3.329 ETKDGv3 8
49X CAU 1.204 -3.879 1.791 ETKDGv3 9
49X CAT 2.506 -4.515 1.270 ETKDGv3 10
49X CAS 2.467 -4.775 -0.250 ETKDGv3 11
49X CAR 3.163 -3.689 -1.090 ETKDGv3 12
49X CAQ 2.472 -2.323 -0.993 ETKDGv3 13
49X CAP 2.924 -1.386 -2.123 ETKDGv3 14
49X CAO 2.281 0.007 -1.999 ETKDGv3 15
49X CAN 3.113 0.973 -1.132 ETKDGv3 16
49X OBN 4.203 1.441 -1.889 ETKDGv3 17
49X CAM 2.283 2.166 -0.579 ETKDGv3 18
49X OBL 3.081 2.914 0.308 ETKDGv3 19
49X CAL 1.657 3.083 -1.675 ETKDGv3 20
49X CAK 1.110 4.355 -1.072 ETKDGv3 21
49X CAH 0.811 5.413 -1.839 ETKDGv3 22
49X OG 0.151 7.665 -2.245 ETKDGv3 23
49X CG -0.181 8.941 -1.700 ETKDGv3 24
49X CG5 1.100 9.724 -1.363 ETKDGv3 25
49X OG6 0.794 11.027 -0.942 ETKDGv3 26
49X CG4 -1.214 8.897 -0.528 ETKDGv3 27
49X OG5 -0.558 8.842 0.717 ETKDGv3 28
49X CG3 -2.119 7.668 -0.702 ETKDGv3 29
49X OG4 -3.053 7.610 0.346 ETKDGv3 30
49X CG2 -1.274 6.368 -0.750 ETKDGv3 31
49X OG3 -1.932 5.397 -1.529 ETKDGv3 32
49X NBC 0.551 2.393 -2.342 ETKDGv3 33
49X CBD 0.330 2.431 -3.759 ETKDGv3 34
49X OBM 1.061 3.137 -4.505 ETKDGv3 35
49X CBE -0.788 1.631 -4.354 ETKDGv3 36
49X CBF -2.143 2.319 -4.124 ETKDGv3 37
49X CBG -3.328 1.364 -4.383 ETKDGv3 38
49X CBH -3.985 0.824 -3.095 ETKDGv3 39
49X CBI -3.047 0.017 -2.180 ETKDGv3 40
49X CBJ -2.724 -1.384 -2.731 ETKDGv3 41
49X CBK -1.498 -2.013 -2.051 ETKDGv3 42
49X CBO -1.682 -2.172 -0.563 ETKDGv3 43
49X CBR -2.425 -3.341 -0.032 ETKDGv3 44
49X CBS -2.622 -3.473 1.286 ETKDGv3 45
49X CBT -2.105 -2.451 2.218 ETKDGv3 46
49X CBU -1.435 -1.393 1.747 ETKDGv3 47
49X CBV -1.214 -1.244 0.294 ETKDGv3 48
49X H1 0.814 6.965 -0.405 ETKDGv3 49
49X H2 -0.455 -9.970 5.663 ETKDGv3 50
49X H3 -0.804 -10.330 7.388 ETKDGv3 51
49X H4 0.859 -9.832 6.904 ETKDGv3 52
49X H5 -0.490 -8.009 8.043 ETKDGv3 53
49X H6 -1.677 -8.062 6.699 ETKDGv3 54
49X H7 1.347 -7.456 6.357 ETKDGv3 55
49X H8 0.076 -6.212 6.586 ETKDGv3 56
49X H9 -1.101 -7.043 4.486 ETKDGv3 57
49X H10 0.212 -8.245 4.263 ETKDGv3 58
49X H11 1.888 -6.270 4.233 ETKDGv3 59
49X H12 0.802 -6.506 2.821 ETKDGv3 60
49X H13 0.245 -4.503 5.103 ETKDGv3 61
49X H14 -0.733 -4.724 3.618 ETKDGv3 62
49X H15 0.799 -2.739 3.587 ETKDGv3 63
49X H16 2.224 -3.794 3.746 ETKDGv3 64
49X H17 0.326 -4.467 1.445 ETKDGv3 65
49X H18 1.101 -2.866 1.355 ETKDGv3 66
49X H19 3.373 -3.870 1.534 ETKDGv3 67
49X H20 2.660 -5.487 1.784 ETKDGv3 68
49X H21 2.997 -5.732 -0.450 ETKDGv3 69
49X H22 1.423 -4.917 -0.608 ETKDGv3 70
49X H23 3.157 -4.031 -2.148 ETKDGv3 71
49X H24 4.226 -3.593 -0.776 ETKDGv3 72
49X H25 1.372 -2.460 -1.064 ETKDGv3 73
49X H26 2.714 -1.861 -0.013 ETKDGv3 74
49X H27 2.610 -1.831 -3.093 ETKDGv3 75
49X H28 4.033 -1.303 -2.136 ETKDGv3 76
49X H29 1.257 -0.095 -1.585 ETKDGv3 77
49X H30 2.187 0.433 -3.021 ETKDGv3 78
49X H31 3.483 0.402 -0.247 ETKDGv3 79
49X H32 4.963 1.570 -1.263 ETKDGv3 80
49X H33 1.452 1.742 0.028 ETKDGv3 81
49X H34 3.748 3.413 -0.232 ETKDGv3 82
49X H35 2.454 3.346 -2.406 ETKDGv3 83
49X H36 0.893 4.390 -0.007 ETKDGv3 84
49X H37 1.021 5.383 -2.905 ETKDGv3 85
49X H38 -0.678 9.498 -2.525 ETKDGv3 86
49X H39 1.665 9.212 -0.556 ETKDGv3 87
49X H40 1.764 9.759 -2.257 ETKDGv3 88
49X H41 0.541 11.537 -1.755 ETKDGv3 89
49X H42 -1.839 9.821 -0.578 ETKDGv3 90
49X H43 -1.198 9.176 1.398 ETKDGv3 91
49X H44 -2.664 7.799 -1.667 ETKDGv3 92
49X H45 -3.749 6.957 0.071 ETKDGv3 93
49X H46 -1.185 5.964 0.283 ETKDGv3 94
49X H47 -1.931 5.717 -2.469 ETKDGv3 95
49X H48 -0.170 1.931 -1.743 ETKDGv3 96
49X H49 -0.774 0.620 -3.897 ETKDGv3 97
49X H50 -0.621 1.501 -5.446 ETKDGv3 98
49X H51 -2.204 2.739 -3.095 ETKDGv3 99
49X H52 -2.212 3.182 -4.822 ETKDGv3 100
49X H53 -4.111 1.930 -4.935 ETKDGv3 101
49X H54 -3.033 0.528 -5.052 ETKDGv3 102
49X H55 -4.381 1.688 -2.516 ETKDGv3 103
49X H56 -4.858 0.194 -3.371 ETKDGv3 104
49X H57 -3.551 -0.105 -1.197 ETKDGv3 105
49X H58 -2.119 0.588 -1.987 ETKDGv3 106
49X H59 -2.510 -1.331 -3.818 ETKDGv3 107
49X H60 -3.608 -2.047 -2.597 ETKDGv3 108
49X H61 -0.601 -1.397 -2.272 ETKDGv3 109
49X H62 -1.313 -3.012 -2.500 ETKDGv3 110
49X H63 -2.811 -4.092 -0.710 ETKDGv3 111
49X H64 -3.161 -4.329 1.672 ETKDGv3 112
49X H65 -2.265 -2.562 3.283 ETKDGv3 113
49X H66 -1.051 -0.645 2.429 ETKDGv3 114
49X H67 -0.679 -0.375 -0.067 ETKDGv3 115
#