Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 3YM    

Bonds between two atoms of the molecule

Total Number of Bonds: 28


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 CAI CD1 C C doub 1.38 N Y
2 CAI CAK C C sing 1.39 N Y
3 CD1 CG C C sing 1.38 N Y
4 O C O C doub 1.21 N N
5 CA C C C sing 1.51 N N
6 CA N C N sing 1.47 N N
7 CA CB C C sing 1.53 N N
8 OAL CAK O C sing 1.36 N N
9 CAK CAJ C C doub 1.39 N Y
10 CG CB C C sing 1.51 N N
11 CG CD2 C C doub 1.38 N Y
12 CAJ CD2 C C sing 1.39 N Y
13 CAJ OAM C O sing 1.36 N N
14 OAM CAN O C sing 1.43 N N
15 CAN H1 C H sing 1.09 N N
16 CAN H11 C H sing 1.09 N N
17 CAN H3 C H sing 1.09 N N
18 CD2 H4 C H sing 1.08 N N
19 OAL H5 O H sing 0.97 N N
20 CAI H6 C H sing 1.08 N N
21 CD1 H7 C H sing 1.08 N N
22 CB H8 C H sing 1.09 N N
23 CB H9 C H sing 1.09 N N
24 CA HA C H sing 1.09 N N
25 N H N H sing 1.01 N N
26 N H2 N H sing 1.01 N N
27 C OXT C O sing 1.34 N N
28 OXT HXT O H sing 0.97 N N