Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 3EF    

Bonds between two atoms of the molecule

Total Number of Bonds: 93


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O C O C doub 1.21 N N
2 C CA C C sing 1.51 N N
3 C OXT C O sing 1.34 N N
4 CA N C N sing 1.47 N N
5 N CBN N C sing 1.35 N N
6 N HN N H sing 0.97 N N
7 CB CA C C sing 1.53 N N
8 CA HA C H sing 1.09 N N
9 CG CB C C sing 1.51 N N
10 CB HB C H sing 1.09 N N
11 CB HBA C H sing 1.09 N N
12 CD1 CG C C doub 1.38 N Y
13 CG CD2 C C sing 1.38 N Y
14 OH CZ O C sing 1.36 N N
15 OH HOH O H sing 0.97 N N
16 CE1 CZ C C doub 1.39 N Y
17 CZ CE2 C C sing 1.39 N Y
18 CBM OAB C O doub 1.21 N N
19 CBN OAC C O doub 1.21 N N
20 OAD PBY O P doub 1.48 N N
21 PBY OAG P O sing 1.61 N N
22 OAG HOAG O H sing 0.97 N N
23 CAL CAH C C doub 1.38 N Y
24 CAH CAK C C sing 1.38 N Y
25 CAH HAH C H sing 1.08 N N
26 CAN CAI C C doub 1.38 N Y
27 CAM CAI C C sing 1.38 N Y
28 CAI HAI C H sing 1.08 N N
29 CAO CAJ C C doub 1.38 N Y
30 CAJ CAP C C sing 1.38 N Y
31 CAJ HAJ C H sing 1.08 N N
32 CAQ CAK C C doub 1.38 N Y
33 CAK HAK C H sing 1.08 N N
34 CAR CAL C C sing 1.38 N Y
35 CAL HAL C H sing 1.08 N N
36 CAS CAM C C doub 1.38 N Y
37 CAM HAM C H sing 1.08 N N
38 CAT CAN C C sing 1.38 N Y
39 CAN HAN C H sing 1.08 N N
40 CAO CAU C C sing 1.38 N Y
41 CAO HAO C H sing 1.08 N N
42 CAP CAV C C doub 1.38 N Y
43 CAP HAP C H sing 1.08 N N
44 CBP CAQ C C sing 1.38 N Y
45 CAQ HAQ C H sing 1.08 N N
46 CAR CBP C C doub 1.38 N Y
47 CAR HAR C H sing 1.08 N N
48 CBQ CAS C C sing 1.38 N Y
49 CAS HAS C H sing 1.08 N N
50 CBQ CAT C C doub 1.38 N Y
51 CAT HAT C H sing 1.08 N N
52 CAU CBT C C doub 1.39 N Y
53 CAU HAU C H sing 1.08 N N
54 CAV CBT C C sing 1.39 N Y
55 CAV HAV C H sing 1.08 N N
56 CBU CBA C C sing 1.42 N Y
57 CBA CBS C C doub 1.35 N Y
58 CBA HBAA C H sing 1.08 N N
59 OBJ CBB O C sing 1.45 N N
60 CBB CBP C C sing 1.51 N N
61 CBB HBB C H sing 1.09 N N
62 CBB HBBA C H sing 1.09 N N
63 CBS CBC C C sing 1.51 N N
64 CBC CBV C C sing 1.53 N N
65 CBC HBC C H sing 1.09 N N
66 CBC HBCA C H sing 1.09 N N
67 CBE CBX C C sing 1.53 N N
68 CBE CBQ C C sing 1.51 N N
69 CBE HBE C H sing 1.09 N N
70 CBE HBEA C H sing 1.09 N N
71 CBV CBF C C sing 1.53 N N
72 CBF PBY C P sing 1.82 N N
73 CBF HBF C H sing 1.09 N N
74 CBF HBFA C H sing 1.09 N N
75 CBU NBG C N doub 1.31 N Y
76 NBG OBK N O sing 1.21 N Y
77 CBX NBI C N sing 1.46 N N
78 NBI CBM N C sing 1.35 N N
79 NBI HNBI N H sing 0.97 N N
80 CBM OBJ C O sing 1.35 N N
81 OBK CBS O C sing 1.34 N Y
82 CBN CBV C C sing 1.51 N N
83 CBT CBU C C sing 1.48 N N
84 CBV HBV C H sing 1.09 N N
85 PBY CBX P C sing 1.82 N N
86 CBX HBX C H sing 1.09 N N
87 CE1 CD1 C C sing 1.38 N Y
88 CD1 HD1 C H sing 1.08 N N
89 CE2 CD2 C C doub 1.38 N Y
90 CD2 HD2 C H sing 1.08 N N
91 CE1 HE1 C H sing 1.08 N N
92 CE2 HE2 C H sing 1.08 N N
93 OXT HOXT O H sing 0.97 N N