Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 3EF

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 89


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 OAB O OAB N N N 0 4.949 -0.032 -1.655
2 CAH C CAH N Y N 0 9.86 3.934 1.021
3 CAK C CAK N Y N 0 8.688 4.506 0.563
4 CAL C CAL N Y N 0 10.09 2.584 0.832
5 CAQ C CAQ N Y N 0 7.743 3.727 -0.078
6 CAR C CAR N Y N 0 9.148 1.806 0.185
7 CBB C CBB N N N 0 6.944 1.528 -0.967
8 OBJ O OBJ N N N 0 6.022 0.973 0.007
9 CBM C CBM N N N 0 5.036 0.185 -0.463
10 CBP C CBP N Y N 0 7.97 2.376 -0.262
11 OAD O OAD N N N 0 1.126 -0.008 1.311
12 PBY P PBY N N N 0 1.497 -0.303 -0.091
13 OAG O OAG N N N 0 1.661 1.076 -0.905
14 CBX C CBX R N N 0 3.074 -1.219 -0.123
15 NBI N NBI N N N 0 4.146 -0.362 0.389
16 CBE C CBE N N N 0 2.956 -2.467 0.754
17 CBQ C CBQ N Y N 0 4.214 -3.288 0.63
18 CAS C CAS N Y N 0 5.303 -3.009 1.435
19 CAM C CAM N Y N 0 6.457 -3.762 1.321
20 CAI C CAI N Y N 0 6.521 -4.794 0.403
21 CAN C CAN N Y N 0 5.432 -5.073 -0.401
22 CAT C CAT N Y N 0 4.277 -4.323 -0.284
23 OAC O OAC N N N 0 -2.009 -2.725 -1.314
24 CAJ C CAJ N Y N 0 -6.14 5.844 1.218
25 CAO C CAO N Y N 0 -6.803 5.042 0.307
26 CAP C CAP N Y N 0 -4.798 5.635 1.482
27 CAU C CAU N Y N 0 -6.128 4.028 -0.343
28 CAV C CAV N Y N 0 -4.115 4.621 0.842
29 CBA C CBA N Y N 0 -2.675 2.379 -0.62
30 CBC C CBC N N N 0 -1.23 0.566 -1.695
31 CBF C CBF N N N 0 0.192 -1.314 -0.865
32 NBG N NBG N Y N 0 -4.534 1.888 -1.659
33 OBK O OBK N Y N 0 -3.689 1.117 -2.05
34 CBN C CBN N N N 0 -2.269 -1.58 -1.012
35 CBS C CBS N Y N 0 -2.504 1.335 -1.463
36 CBT C CBT N Y N 0 -4.777 3.814 -0.081
37 CBU C CBU N Y N 0 -4.047 2.725 -0.777
38 CBV C CBV S N N 0 -1.156 -0.607 -0.715
39 N N N N N N 0 -3.553 -1.176 -0.942
40 CA C CA S N N 0 -4.634 -2.122 -1.23
41 C C C N N N 0 -4.88 -2.165 -2.716
42 O O O N N N 0 -4.22 -1.477 -3.458
43 CB C CB N N N 0 -5.91 -1.671 -0.515
44 CG C CG N Y N 0 -5.703 -1.745 0.976
45 CD1 C CD1 N Y N 0 -6.002 -2.91 1.657
46 CD2 C CD2 N Y N 0 -5.208 -0.649 1.659
47 CE1 C CE1 N Y N 0 -5.812 -2.981 3.024
48 CE2 C CE2 N Y N 0 -5.017 -0.715 3.026
49 CZ C CZ N Y N 0 -5.321 -1.881 3.713
50 OH O OH N N N 0 -5.134 -1.948 5.057
51 OXT O OXT N N N 0 -5.833 -2.968 -3.215
52 HAH H HAH N N N 0 10.598 4.543 1.523
53 HAK H HAK N N N 0 8.51 5.562 0.707
54 HAL H HAL N N N 0 11.006 2.137 1.19
55 HAQ H HAQ N N N 0 6.827 4.174 -0.436
56 HAR H HAR N N N 0 9.328 0.752 0.037
57 HBB H HBB N N N 0 7.444 0.717 -1.497
58 HBBA H HBBA N N N 0 6.393 2.142 -1.68
59 HOAG H HOAG N N N 0 1.905 0.959 -1.834
60 HBX H HBX N N N 0 3.302 -1.514 -1.147
61 HNBI H HNBI N N N 0 4.216 -0.188 1.341
62 HBE H HBE N N N 0 2.817 -2.169 1.793
63 HBEA H HBEA N N N 0 2.102 -3.06 0.428
64 HAS H HAS N N N 0 5.253 -2.203 2.151
65 HAM H HAM N N N 0 7.308 -3.544 1.949
66 HAJ H HAJ N N N 0 -6.67 6.639 1.721
67 HAI H HAI N N N 0 7.423 -5.382 0.315
68 HAN H HAN N N N 0 5.483 -5.879 -1.118
69 HAT H HAT N N N 0 3.424 -4.543 -0.909
70 HAO H HAO N N N 0 -7.85 5.209 0.104
71 HAP H HAP N N N 0 -4.284 6.267 2.192
72 HAU H HAU N N N 0 -6.647 3.402 -1.054
73 HAV H HAV N N N 0 -3.068 4.459 1.049
74 HBAA H HBAA N N N 0 -1.942 2.841 0.025
75 HBC H HBC N N N 0 -1.215 0.187 -2.717
76 HBV H HBV N N N 0 -1.26 -0.236 0.305
77 HBCA H HBCA N N N 0 -0.375 1.224 -1.538
78 HBF H HBF N N N 0 0.416 -1.448 -1.923
79 HBFA H HBFA N N N 0 0.149 -2.287 -0.377
80 HN H HN N N N 0 -3.761 -0.26 -0.7
81 HD1 H HD1 N N N 0 -6.384 -3.766 1.121
82 HA H HA N N N 0 -4.352 -3.114 -0.879
83 HB H HB N N N 0 -6.142 -0.645 -0.799
84 HBA H HBA N N N 0 -6.735 -2.323 -0.8
85 HD2 H HD2 N N N 0 -4.971 0.258 1.124
86 HE1 H HE1 N N N 0 -6.05 -3.89 3.556
87 HE2 H HE2 N N N 0 -4.631 0.141 3.559
88 HOH H HOH N N N 0 -4.255 -2.254 5.317
89 HOXT H HOXT N N N 0 -5.954 -2.962 -4.175