Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 3BI    

Bonds between two atoms of the molecule

Total Number of Bonds: 76


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 N1 C N C sing 1.38 N N
2 N1 HN1 N H sing 0.97 N N
3 N1 HN1A N H sing 0.97 N N
4 C2 N4 C N doub 1.33 N Y
5 C2 C5 C C sing 1.42 N Y
6 C2 C1 C C sing 1.46 N Y
7 N3 C1 N C sing 1.38 N N
8 N3 HN3 N H sing 0.97 N N
9 N3 HN3A N H sing 0.97 N N
10 C4 N5 C N sing 1.32 N Y
11 C4 C3 C C doub 1.39 N Y
12 C4 H4 C H sing 1.08 N N
13 N5 C5 N C doub 1.33 N Y
14 C6 N6 C N sing 1.47 N N
15 C6 C3 C C sing 1.51 N N
16 C6 H6 C H sing 1.09 N N
17 C6 H6A C H sing 1.09 N N
18 C7 N6 C N sing 1.47 N N
19 C7 H7 C H sing 1.09 N N
20 C7 H7A C H sing 1.09 N N
21 C9 C8 C C doub 1.4 N Y
22 C9 C10 C C sing 1.38 N Y
23 C9 H9 C H sing 1.08 N N
24 C11 C12 C C sing 1.39 N Y
25 C11 C10 C C doub 1.39 N Y
26 C11 N6 C N sing 1.39 N N
27 C12 C13 C C doub 1.38 N Y
28 C12 H12 C H sing 1.08 N N
29 C13 C8 C C sing 1.4 N Y
30 C13 H13 C H sing 1.08 N N
31 C14 O C O doub 1.22 N N
32 C14 N7 C N sing 1.35 N N
33 C14 C8 C C sing 1.47 N N
34 C15 C16 C C sing 1.51 N N
35 C15 C17 C C sing 1.53 N N
36 C15 N7 C N sing 1.46 N N
37 C15 H15 C H sing 1.09 N N
38 C16 O1 C O sing 1.34 N N
39 C16 O2 C O doub 1.21 N N
40 C N C N doub 1.32 N Y
41 C N2 C N sing 1.33 N Y
42 N C5 N C sing 1.34 N Y
43 O8 P O P doub 1.48 N N
44 P O7 P O sing 1.61 N N
45 P C19 P C sing 1.82 N N
46 P C18 P C sing 1.82 N N
47 C19 C20 C C sing 1.53 N N
48 C19 H19 C H sing 1.09 N N
49 C19 H19A C H sing 1.09 N N
50 C20 C24 C C sing 1.51 N N
51 C20 C21 C C sing 1.53 N N
52 C20 H20 C H sing 1.09 N N
53 C24 O6 C O doub 1.21 N N
54 C24 O5 C O sing 1.34 N N
55 C21 C22 C C sing 1.53 N N
56 C21 H21 C H sing 1.09 N N
57 C21 H21A C H sing 1.09 N N
58 C22 C23 C C sing 1.51 N N
59 C22 H22 C H sing 1.09 N N
60 C22 H22A C H sing 1.09 N N
61 C23 O4 C O sing 1.34 N N
62 C23 O3 C O doub 1.21 N N
63 C18 C17 C C sing 1.53 N N
64 C18 H18 C H sing 1.09 N N
65 C18 H18A C H sing 1.09 N N
66 C17 H17 C H sing 1.09 N N
67 C17 H17A C H sing 1.09 N N
68 N7 HN7 N H sing 0.97 N N
69 C10 H10 C H sing 1.08 N N
70 C3 N4 C N sing 1.32 N Y
71 C1 N2 C N doub 1.33 N Y
72 O4 H27 O H sing 0.97 N N
73 O7 H28 O H sing 0.97 N N
74 O1 H29 O H sing 0.97 N N
75 O5 H30 O H sing 0.97 N N
76 C7 H7B C H sing 1.09 N N