data_3BI
#
_chem_comp.id 3BI
_chem_comp.name
"(2S)-2-{[(R)-[(3R)-3-carboxy-3-{[(4-{[(2,4-diaminopteridin-6-yl)methyl](methyl)amino}phenyl)carbonyl]amino}propyl](hydroxy)phosphoryl]methyl}pentanedioic acid"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C25 H31 N8 O9 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2007-11-30
_chem_comp.pdbx_modified_date 2011-06-04
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 618.536
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 3BI
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3BI1
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
3BI N1 N1 N 0 1 N N N N N N 34.263 47.850 41.929 11.422 1.039 -1.315 N1 3BI 1
3BI C2 C2 C 0 1 Y N N N N N 30.836 50.132 41.997 8.248 -1.264 -0.178 C2 3BI 2
3BI N3 N3 N 0 1 N N N N N N 32.353 52.079 42.267 9.176 -3.057 -1.612 N3 3BI 3
3BI C4 C4 C 0 1 Y N N N N N 28.377 48.910 41.767 6.482 -0.183 1.526 C4 3BI 4
3BI N5 N5 N 0 1 Y N N N N N 29.482 48.110 41.740 7.506 0.557 1.156 N5 3BI 5
3BI C6 C6 C 0 1 N N N N N N 27.322 51.322 41.969 5.146 -2.306 1.481 C6 3BI 6
3BI C7 C7 C 0 1 N N N N N N 26.232 50.511 39.980 3.997 -3.120 -0.630 C7 3BI 7
3BI C9 C9 C 0 1 Y N N N N N 24.021 49.862 44.245 2.253 0.713 1.820 C9 3BI 8
3BI C11 C11 C 0 1 Y N N N N N 25.137 50.296 42.131 3.121 -1.175 0.622 C11 3BI 9
3BI C12 C12 C 0 1 Y N N N N N 24.507 49.174 41.600 2.100 -1.059 -0.318 C12 3BI 10
3BI C13 C13 C 0 1 Y N N N N N 23.645 48.400 42.376 1.158 -0.063 -0.194 C13 3BI 11
3BI C14 C14 C 0 1 N N N N N N 22.541 47.800 44.506 0.219 1.900 1.014 C14 3BI 12
3BI C15 C15 C 0 1 N N R N N N 20.829 46.104 44.824 -1.771 3.075 0.241 C15 3BI 13
3BI C16 C16 C 0 1 N N N N N N 20.330 46.542 46.183 -1.248 4.342 -0.383 C16 3BI 14
3BI C C C 0 1 Y N N N N N 33.128 48.584 41.956 10.349 0.255 -0.934 C 3BI 15
3BI O O O 0 1 N N N N N N 22.945 47.621 45.783 0.280 2.678 1.947 O 3BI 16
3BI N N N 0 1 Y N N N N N 31.895 47.956 41.840 9.469 0.766 -0.097 N 3BI 17
3BI O1 O1 O 0 1 N N N N N N 20.293 45.816 47.231 -2.000 5.454 -0.376 O1 3BI 18
3BI O2 O2 O 0 1 N N N N N N 19.892 47.668 46.198 -0.151 4.359 -0.889 O2 3BI 19
3BI O8 O8 O 0 1 N N N N N N 18.217 42.972 42.848 -6.118 2.089 -0.671 O8 3BI 20
3BI P P P 0 1 N N R N N N 17.529 43.913 43.850 -5.195 0.934 -0.598 P 3BI 21
3BI O7 O7 O 0 1 N N N N N N 16.674 42.902 44.885 -4.849 0.428 -2.086 O7 3BI 22
3BI C19 C19 C 0 1 N N N N N N 16.397 44.960 43.042 -5.985 -0.417 0.336 C19 3BI 23
3BI C20 C20 C 0 1 N N S N N N 15.915 44.518 41.623 -7.335 -0.755 -0.301 C20 3BI 24
3BI C24 C24 C 0 1 N N N N N N 17.068 44.570 40.603 -8.337 0.314 0.049 C24 3BI 25
3BI O6 O6 O 0 1 N N N N N N 17.955 45.451 40.695 -8.006 1.251 0.737 O6 3BI 26
3BI O5 O5 O 0 1 N N N N N N 17.052 43.758 39.619 -9.598 0.227 -0.404 O5 3BI 27
3BI C21 C21 C 0 1 N N N N N N 14.664 45.279 41.108 -7.824 -2.105 0.227 C21 3BI 28
3BI C22 C22 C 0 1 N N N N N N 14.941 46.755 41.058 -9.110 -2.502 -0.501 C22 3BI 29
3BI C23 C23 C 0 1 N N N N N N 13.811 47.541 40.404 -9.592 -3.831 0.020 C23 3BI 30
3BI O4 O4 O 0 1 N N N N N N 13.065 46.989 39.525 -10.712 -4.380 -0.477 O4 3BI 31
3BI O3 O3 O 0 1 N N N N N N 13.732 48.774 40.673 -8.971 -4.403 0.884 O3 3BI 32
3BI C18 C18 C 0 1 N N N N N N 18.689 44.860 44.713 -3.658 1.437 0.245 C18 3BI 33
3BI C17 C17 C 0 1 N N N N N N 19.669 45.646 43.892 -3.060 2.652 -0.467 C17 3BI 34
3BI N7 N7 N 0 1 N N N N N N 21.584 47.091 44.024 -0.770 2.014 0.105 N7 3BI 35
3BI C8 C8 C 0 1 Y N N N N N 23.392 48.735 43.691 1.227 0.832 0.878 C8 3BI 36
3BI C10 C10 C 0 1 Y N N N N N 24.868 50.655 43.462 3.192 -0.285 1.690 C10 3BI 37
3BI N6 N6 N 0 1 N N N N N N 26.007 51.085 41.310 4.071 -2.182 0.493 N6 3BI 38
3BI C3 C3 C 0 1 Y N N N N N 28.484 50.317 41.896 6.328 -1.481 1.042 C3 3BI 39
3BI N4 N4 N 0 1 Y N N N N N 29.721 50.871 42.012 7.206 -1.994 0.207 N4 3BI 40
3BI C5 C5 C 0 1 Y N N N N N 30.719 48.658 41.858 8.409 0.056 0.310 C5 3BI 41
3BI C1 C1 C 0 1 Y N N N N N 32.201 50.734 42.125 9.262 -1.781 -1.100 C1 3BI 42
3BI N2 N2 N 0 1 Y N N N N N 33.274 49.922 42.105 10.264 -0.977 -1.426 N2 3BI 43
3BI HN1 HN1 H 0 1 N N N N N N 34.521 47.669 40.980 11.511 1.940 -0.968 HN1 3BI 44
3BI HN1A HN1A H 0 0 N N N N N N 34.997 48.355 42.383 12.087 0.687 -1.927 HN1A 3BI 45
3BI HN3 HN3 H 0 1 N N N N N N 32.390 52.310 43.239 8.434 -3.631 -1.363 HN3 3BI 46
3BI HN3A HN3A H 0 0 N N N N N N 33.202 52.367 41.823 9.857 -3.382 -2.222 HN3A 3BI 47
3BI H4 H4 H 0 1 N N N N N N 27.398 48.460 41.688 5.752 0.221 2.211 H4 3BI 48
3BI H6 H6 H 0 1 N N N N N N 27.710 52.246 41.516 4.793 -1.949 2.448 H6 3BI 49
3BI H6A H6A H 0 1 N N N N N N 27.055 51.289 43.036 5.443 -3.351 1.566 H6A 3BI 50
3BI H7 H7 H 0 1 N N N N N N 26.288 51.319 39.236 3.389 -3.980 -0.346 H7 3BI 51
3BI H7A H7A H 0 1 N N N N N N 27.176 49.946 39.980 3.545 -2.624 -1.488 H7A 3BI 52
3BI H9 H9 H 0 1 N N N N N N 23.850 50.118 45.280 2.312 1.406 2.646 H9 3BI 53
3BI H12 H12 H 0 1 N N N N N N 24.689 48.899 40.572 2.047 -1.751 -1.145 H12 3BI 54
3BI H13 H13 H 0 1 N N N N N N 23.171 47.531 41.944 0.367 0.026 -0.923 H13 3BI 55
3BI H15 H15 H 0 1 N N N N N N 21.516 45.297 45.118 -1.976 3.247 1.298 H15 3BI 56
3BI H19 H19 H 0 1 N N N N N N 15.504 45.025 43.681 -5.343 -1.298 0.314 H19 3BI 57
3BI H19A H19A H 0 0 N N N N N N 16.936 45.906 42.885 -6.139 -0.105 1.368 H19A 3BI 58
3BI H20 H20 H 0 1 N N N N N N 15.590 43.473 41.734 -7.223 -0.808 -1.384 H20 3BI 59
3BI H21 H21 H 0 1 N N N N N N 14.413 44.923 40.098 -7.060 -2.862 0.053 H21 3BI 60
3BI H21A H21A H 0 0 N N N N N N 13.823 45.093 41.792 -8.021 -2.027 1.296 H21A 3BI 61
3BI H22 H22 H 0 1 N N N N N N 15.068 47.120 42.088 -9.875 -1.745 -0.326 H22 3BI 62
3BI H22A H22A H 0 0 N N N N N N 15.848 46.906 40.453 -8.913 -2.580 -1.570 H22A 3BI 63
3BI H18 H18 H 0 1 N N N N N N 18.127 45.582 45.323 -3.880 1.696 1.281 H18 3BI 64
3BI H18A H18A H 0 0 N N N N N N 19.296 44.136 45.276 -2.944 0.614 0.221 H18A 3BI 65
3BI H17 H17 H 0 1 N N N N N N 19.171 46.524 43.455 -3.774 3.476 -0.442 H17 3BI 66
3BI H17A H17A H 0 0 N N N N N N 20.063 45.024 43.074 -2.839 2.394 -1.502 H17A 3BI 67
3BI HN7 HN7 H 0 1 N N N N N N 21.338 47.213 43.062 -0.818 1.393 -0.639 HN7 3BI 68
3BI H10 H10 H 0 1 N N N N N N 25.315 51.544 43.882 3.985 -0.377 2.417 H10 3BI 69
3BI H27 H27 H 0 1 N N N N N N 12.486 47.640 39.146 -10.982 -5.234 -0.112 H27 3BI 70
3BI H28 H28 H 0 1 N N N N N N 16.513 42.071 44.455 -4.247 -0.328 -2.115 H28 3BI 71
3BI H29 H29 H 0 1 N N N N N N 19.891 46.303 47.940 -1.622 6.243 -0.789 H29 3BI 72
3BI H30 H30 H 0 1 N N N N N N 17.779 43.949 39.038 -10.205 0.937 -0.153 H30 3BI 73
3BI H7B H7B H 0 1 N N N N N N 25.401 49.837 39.726 5.001 -3.455 -0.890 H7B 3BI 74
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
3BI N1 C SING N N 1
3BI N1 HN1 SING N N 2
3BI N1 HN1A SING N N 3
3BI C2 N4 DOUB Y N 4
3BI C2 C5 SING Y N 5
3BI C2 C1 SING Y N 6
3BI N3 C1 SING N N 7
3BI N3 HN3 SING N N 8
3BI N3 HN3A SING N N 9
3BI C4 N5 SING Y N 10
3BI C4 C3 DOUB Y N 11
3BI C4 H4 SING N N 12
3BI N5 C5 DOUB Y N 13
3BI C6 N6 SING N N 14
3BI C6 C3 SING N N 15
3BI C6 H6 SING N N 16
3BI C6 H6A SING N N 17
3BI C7 N6 SING N N 18
3BI C7 H7 SING N N 19
3BI C7 H7A SING N N 20
3BI C9 C8 DOUB Y N 21
3BI C9 C10 SING Y N 22
3BI C9 H9 SING N N 23
3BI C11 C12 SING Y N 24
3BI C11 C10 DOUB Y N 25
3BI C11 N6 SING N N 26
3BI C12 C13 DOUB Y N 27
3BI C12 H12 SING N N 28
3BI C13 C8 SING Y N 29
3BI C13 H13 SING N N 30
3BI C14 O DOUB N N 31
3BI C14 N7 SING N N 32
3BI C14 C8 SING N N 33
3BI C15 C16 SING N N 34
3BI C15 C17 SING N N 35
3BI C15 N7 SING N N 36
3BI C15 H15 SING N N 37
3BI C16 O1 SING N N 38
3BI C16 O2 DOUB N N 39
3BI C N DOUB Y N 40
3BI C N2 SING Y N 41
3BI N C5 SING Y N 42
3BI O8 P DOUB N N 43
3BI P O7 SING N N 44
3BI P C19 SING N N 45
3BI P C18 SING N N 46
3BI C19 C20 SING N N 47
3BI C19 H19 SING N N 48
3BI C19 H19A SING N N 49
3BI C20 C24 SING N N 50
3BI C20 C21 SING N N 51
3BI C20 H20 SING N N 52
3BI C24 O6 DOUB N N 53
3BI C24 O5 SING N N 54
3BI C21 C22 SING N N 55
3BI C21 H21 SING N N 56
3BI C21 H21A SING N N 57
3BI C22 C23 SING N N 58
3BI C22 H22 SING N N 59
3BI C22 H22A SING N N 60
3BI C23 O4 SING N N 61
3BI C23 O3 DOUB N N 62
3BI C18 C17 SING N N 63
3BI C18 H18 SING N N 64
3BI C18 H18A SING N N 65
3BI C17 H17 SING N N 66
3BI C17 H17A SING N N 67
3BI N7 HN7 SING N N 68
3BI C10 H10 SING N N 69
3BI C3 N4 SING Y N 70
3BI C1 N2 DOUB Y N 71
3BI O4 H27 SING N N 72
3BI O7 H28 SING N N 73
3BI O1 H29 SING N N 74
3BI O5 H30 SING N N 75
3BI C7 H7B SING N N 76
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
3BI SMILES ACDLabs 10.04 O=C(O)C(CCC(=O)O)CP(=O)(O)CCC(C(=O)O)NC(=O)c1ccc(cc1)N(C)Cc2nc3c(nc2)nc(nc3N)N
3BI SMILES_CANONICAL CACTVS 3.341 CN(Cc1cnc2nc(N)nc(N)c2n1)c3ccc(cc3)C(=O)N[C@H](CC[P@](O)(=O)C[C@@H](CCC(O)=O)C(O)=O)C(O)=O
3BI SMILES CACTVS 3.341 CN(Cc1cnc2nc(N)nc(N)c2n1)c3ccc(cc3)C(=O)N[CH](CC[P](O)(=O)C[CH](CCC(O)=O)C(O)=O)C(O)=O
3BI SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 C[N@](Cc1cnc2c(n1)c(nc(n2)N)N)c3ccc(cc3)C(=O)N[C@H](CC[P@](=O)(C[C@@H](CCC(=O)O)C(=O)O)O)C(=O)O
3BI SMILES "OpenEye OEToolkits" 1.5.0 CN(Cc1cnc2c(n1)c(nc(n2)N)N)c3ccc(cc3)C(=O)NC(CCP(=O)(CC(CCC(=O)O)C(=O)O)O)C(=O)O
3BI InChI InChI 1.03 InChI=1S/C25H31N8O9P/c1-33(11-15-10-28-21-19(29-15)20(26)31-25(27)32-21)16-5-2-13(3-6-16)22(36)30-17(24(39)40)8-9-43(41,42)12-14(23(37)38)4-7-18(34)35/h2-3,5-6,10,14,17H,4,7-9,11-12H2,1H3,(H,30,36)(H,34,35)(H,37,38)(H,39,40)(H,41,42)(H4,26,27,28,31,32)/t14-,17-/m1/s1
3BI InChIKey InChI 1.03 BHCAHIKEPKIXJL-RHSMWYFYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
3BI "SYSTEMATIC NAME" ACDLabs 10.04 "(2S)-2-{[(R)-[(3R)-3-carboxy-3-{[(4-{[(2,4-diaminopteridin-6-yl)methyl](methyl)amino}phenyl)carbonyl]amino}propyl](hydroxy)phosphoryl]methyl}pentanedioic acid"
3BI "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-[[[(3R)-3-[[4-[(2,4-diaminopteridin-6-yl)methyl-methyl-amino]phenyl]carbonylamino]-4-hydroxy-4-oxo-butyl]-hydroxy-phosphoryl]methyl]pentanedioic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
3BI 'Create component' 2007-11-30 RCSB
3BI 'Modify aromatic_flag' 2011-06-04 RCSB
3BI 'Modify descriptor' 2011-06-04 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
3BI N1 N 3.805 6.793 1
3BI C2 C 7.702 4.543 2
3BI N3 N 6.404 2.293 3
3BI C4 C 10.402 6.074 4
3BI N5 N 9.043 6.845 5
3BI C6 C 11.699 3.757 6
3BI C7 C 13.006 6.002 7
3BI C9 C 16.895 3.737 8
3BI C11 C 14.297 3.747 9
3BI C12 C 14.291 2.247 10
3BI C13 C 15.587 1.492 11
3BI C14 C 18.185 1.482 12
3BI C15 C 20.783 1.472 13
3BI C16 C 22.085 2.217 14
3BI C C 5.104 6.043 15
3BI O O 18.179 -0.018 16
3BI N N 6.404 6.793 17
3BI O1 O 23.381 1.462 18
3BI O2 O 22.091 3.717 19
3BI O8 O 23.568 -2.289 20
3BI P P 22.068 -2.283 21
3BI O7 O 20.568 -2.277 22
3BI C19 C 22.062 -3.783 23
3BI C20 C 23.358 -4.538 24
3BI C24 C 23.352 -6.038 25
3BI O6 O 24.648 -6.793 26
3BI O5 O 22.050 -6.783 27
3BI C21 C 24.660 -3.793 28
3BI C22 C 25.956 -4.548 29
3BI C23 C 27.258 -3.803 30
3BI O4 O 28.554 -4.558 31
3BI O3 O 27.264 -2.303 32
3BI C18 C 22.074 -0.783 33
3BI C17 C 20.777 -0.028 34
3BI N7 N 19.487 2.227 35
3BI C8 C 16.889 2.237 36
3BI C10 C 15.599 4.492 37
3BI N6 N 13.001 4.502 38
3BI C3 C 10.402 4.512 39
3BI N4 N 9.043 3.741 40
3BI C5 C 7.702 6.043 41
3BI C1 C 6.404 3.793 42
3BI N2 N 5.104 4.543 43
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
3BI N1 C SINGLE NONE 1
3BI C2 N4 SINGLE NONE 2
3BI C2 C5 DOUBLE NONE 3
3BI C2 C1 SINGLE NONE 4
3BI N3 C1 SINGLE NONE 5
3BI C4 N5 DOUBLE NONE 6
3BI C4 C3 SINGLE NONE 7
3BI N5 C5 SINGLE NONE 8
3BI C6 N6 SINGLE NONE 9
3BI C6 C3 SINGLE NONE 10
3BI C7 N6 SINGLE NONE 11
3BI C9 C8 DOUBLE NONE 12
3BI C9 C10 SINGLE NONE 13
3BI C11 C12 SINGLE NONE 14
3BI C11 C10 DOUBLE NONE 15
3BI C11 N6 SINGLE NONE 16
3BI C12 C13 DOUBLE NONE 17
3BI C13 C8 SINGLE NONE 18
3BI C14 O DOUBLE NONE 19
3BI C14 N7 SINGLE NONE 20
3BI C14 C8 SINGLE NONE 21
3BI C15 C16 SINGLE NONE 22
3BI C15 C17 SINGLE BEGINWEDGE 23
3BI C15 N7 SINGLE NONE 24
3BI C16 O1 SINGLE NONE 25
3BI C16 O2 DOUBLE NONE 26
3BI C N DOUBLE NONE 27
3BI C N2 SINGLE NONE 28
3BI N C5 SINGLE NONE 29
3BI O8 P DOUBLE NONE 30
3BI P O7 SINGLE BEGINWEDGE 31
3BI P C19 SINGLE NONE 32
3BI P C18 SINGLE NONE 33
3BI C20 C19 SINGLE BEGINWEDGE 34
3BI C20 C24 SINGLE NONE 35
3BI C20 C21 SINGLE NONE 36
3BI C24 O6 DOUBLE NONE 37
3BI C24 O5 SINGLE NONE 38
3BI C21 C22 SINGLE NONE 39
3BI C22 C23 SINGLE NONE 40
3BI C23 O4 SINGLE NONE 41
3BI C23 O3 DOUBLE NONE 42
3BI C18 C17 SINGLE NONE 43
3BI C3 N4 DOUBLE NONE 44
3BI C1 N2 DOUBLE NONE 45
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
3BI MurckoScaffold S1 scaffold c1ccc(NCc2cnc3ncncc3n2)cc1 InChI=1S/C13H11N5/c1-2-4-10(5-3-1)15-6-11-7-16-13-12(18-11)8-14-9-17-13/h1-5,7-9,15H,6H2 XASAJMYKOCBVGD-UHFFFAOYSA-N
3BI amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
3BI peptide F2 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
3BI phenyl F3 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
3BI pteridine F4 fragment c1cnc2ncncc2n1 InChI=1S/C6H4N4/c1-2-9-6-5(8-1)3-7-4-10-6/h1-4H CPNGPNLZQNNVQM-UHFFFAOYSA-N
3BI pyrazine F5 fragment c1cnccn1 InChI=1S/C4H4N2/c1-2-6-4-3-5-1/h1-4H KYQCOXFCLRTKLS-UHFFFAOYSA-N
3BI pyrimidine F6 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
3BI Z2856434894 F7 fragment CC(C)NCc1ccc(N(C)C)cc1 InChI=1S/C12H20N2/c1-10(2)13-9-11-5-7-12(8-6-11)14(3)4/h5-8,10,13H,9H2,1-4H3 NZXPKDJRJFKEIC-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
3BI C2 S1 1
3BI C4 S1 1
3BI N5 S1 1
3BI C6 S1 1
3BI C9 S1 1
3BI C11 S1 1
3BI C12 S1 1
3BI C13 S1 1
3BI C S1 1
3BI N S1 1
3BI C8 S1 1
3BI C10 S1 1
3BI N6 S1 1
3BI C3 S1 1
3BI N4 S1 1
3BI C5 S1 1
3BI C1 S1 1
3BI N2 S1 1
3BI N7 F1 1
3BI C14 F1 1
3BI O F1 1
3BI C8 F1 1
3BI O2 F2 1
3BI C16 F2 1
3BI C15 F2 1
3BI N7 F2 1
3BI C9 F3 1
3BI C8 F3 1
3BI C13 F3 1
3BI C12 F3 1
3BI C11 F3 1
3BI C10 F3 1
3BI C3 F4 1
3BI N4 F4 1
3BI C2 F4 1
3BI C5 F4 1
3BI N5 F4 1
3BI C4 F4 1
3BI N F4 1
3BI C F4 1
3BI N2 F4 1
3BI C1 F4 1
3BI C2 F5 1
3BI C5 F5 1
3BI N5 F5 1
3BI C4 F5 1
3BI C3 F5 1
3BI N4 F5 1
3BI C2 F6 1
3BI C5 F6 1
3BI N F6 1
3BI C F6 1
3BI N2 F6 1
3BI C1 F6 1
3BI C16 F7 1
3BI C15 F7 1
3BI C17 F7 1
3BI N7 F7 1
3BI C14 F7 1
3BI C8 F7 1
3BI C9 F7 1
3BI C10 F7 1
3BI C11 F7 1
3BI C12 F7 1
3BI C13 F7 1
3BI N6 F7 1
3BI C6 F7 1
3BI C7 F7 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 3BI
_pdbe_chem_comp_rdkit_properties.exactmw 618.195
_pdbe_chem_comp_rdkit_properties.amw 618.544
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 17
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 9
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 19
_pdbe_chem_comp_rdkit_properties.NumHBD 7
_pdbe_chem_comp_rdkit_properties.NumHBA 16
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 43
_pdbe_chem_comp_rdkit_properties.NumAtoms 74
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 18
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 1
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.360
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 3
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 0
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 3
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 288.173
_pdbe_chem_comp_rdkit_properties.tpsa 285.140
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.050
_pdbe_chem_comp_rdkit_properties.CrippenMR 148.354
_pdbe_chem_comp_rdkit_properties.chi0v 21.094
_pdbe_chem_comp_rdkit_properties.chi1v 11.970
_pdbe_chem_comp_rdkit_properties.chi2v 4.999
_pdbe_chem_comp_rdkit_properties.chi3v 4.999
_pdbe_chem_comp_rdkit_properties.chi4v 3.150
_pdbe_chem_comp_rdkit_properties.chi0n 51.199
_pdbe_chem_comp_rdkit_properties.chi1n 25.214
_pdbe_chem_comp_rdkit_properties.chi2n 4.075
_pdbe_chem_comp_rdkit_properties.chi3n 4.075
_pdbe_chem_comp_rdkit_properties.chi4n 2.399
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -4.890
_pdbe_chem_comp_rdkit_properties.kappa1 10.379
_pdbe_chem_comp_rdkit_properties.kappa2 13.849
_pdbe_chem_comp_rdkit_properties.kappa3 9.307
_pdbe_chem_comp_rdkit_properties.Phi 3.343
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
3BI UniChem ZINC ZINC000024964083
3BI UniChem PubChem 23644585
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
3BI N1 -8.488 3.329 -3.752 ETKDGv3 1
3BI C2 -6.755 0.504 -1.173 ETKDGv3 2
3BI N3 -4.481 1.323 -1.915 ETKDGv3 3
3BI C4 -8.424 -1.124 0.321 ETKDGv3 4
3BI N5 -8.934 -0.237 -0.485 ETKDGv3 5
3BI C6 -6.341 -2.247 1.380 ETKDGv3 6
3BI C7 -5.185 -3.833 -0.205 ETKDGv3 7
3BI C9 -2.278 -0.576 2.097 ETKDGv3 8
3BI C11 -3.789 -2.325 1.260 ETKDGv3 9
3BI C12 -2.602 -3.220 1.194 ETKDGv3 10
3BI C13 -1.390 -2.778 1.552 ETKDGv3 11
3BI C14 0.139 -0.885 2.405 ETKDGv3 12
3BI C15 2.678 -1.119 2.313 ETKDGv3 13
3BI C16 3.452 -2.363 2.647 ETKDGv3 14
3BI C -7.902 2.369 -2.875 ETKDGv3 15
3BI O 0.234 0.095 3.194 ETKDGv3 16
3BI N -8.663 1.589 -2.161 ETKDGv3 17
3BI O1 3.644 -3.346 1.680 ETKDGv3 18
3BI O2 3.932 -2.517 3.802 ETKDGv3 19
3BI O8 3.429 1.145 -1.684 ETKDGv3 20
3BI P 3.571 1.929 -0.398 ETKDGv3 21
3BI O7 2.803 3.426 -0.579 ETKDGv3 22
3BI C19 5.331 2.220 0.013 ETKDGv3 23
3BI C20 6.272 1.119 -0.541 ETKDGv3 24
3BI C24 7.498 0.953 0.321 ETKDGv3 25
3BI O6 8.066 1.957 0.833 ETKDGv3 26
3BI O5 8.033 -0.316 0.516 ETKDGv3 27
3BI C21 6.657 1.330 -2.028 ETKDGv3 28
3BI C22 7.641 2.486 -2.284 ETKDGv3 29
3BI C23 7.902 2.628 -3.751 ETKDGv3 30
3BI O4 8.918 1.889 -4.349 ETKDGv3 31
3BI O3 7.177 3.384 -4.451 ETKDGv3 32
3BI C18 2.738 1.028 0.949 ETKDGv3 33
3BI C17 3.402 -0.329 1.209 ETKDGv3 34
3BI N7 1.329 -1.494 1.875 ETKDGv3 35
3BI C8 -1.203 -1.381 2.017 ETKDGv3 36
3BI C10 -3.615 -1.062 1.699 ETKDGv3 37
3BI N6 -5.091 -2.805 0.838 ETKDGv3 38
3BI C3 -6.952 -1.261 0.424 ETKDGv3 39
3BI N4 -6.192 -0.470 -0.281 ETKDGv3 40
3BI C5 -8.090 0.617 -1.274 ETKDGv3 41
3BI C1 -5.906 1.398 -1.987 ETKDGv3 42
3BI N2 -6.470 2.265 -2.779 ETKDGv3 43
3BI HN1 -9.526 3.414 -3.830 ETKDGv3 44
3BI HN1A -7.881 3.956 -4.325 ETKDGv3 45
3BI HN3 -3.890 1.960 -2.495 ETKDGv3 46
3BI HN3A -4.009 0.638 -1.285 ETKDGv3 47
3BI H4 -9.078 -1.754 0.909 ETKDGv3 48
3BI H6 -7.056 -3.076 1.571 ETKDGv3 49
3BI H6A -6.167 -1.758 2.362 ETKDGv3 50
3BI H7 -6.229 -3.939 -0.571 ETKDGv3 51
3BI H7A -4.546 -3.553 -1.070 ETKDGv3 52
3BI H9 -2.182 0.449 2.432 ETKDGv3 53
3BI H12 -2.706 -4.248 0.877 ETKDGv3 54
3BI H13 -0.555 -3.465 1.524 ETKDGv3 55
3BI H15 2.630 -0.488 3.229 ETKDGv3 56
3BI H19 5.625 3.220 -0.362 ETKDGv3 57
3BI H19A 5.399 2.262 1.122 ETKDGv3 58
3BI H20 5.729 0.151 -0.489 ETKDGv3 59
3BI H21 7.116 0.389 -2.405 ETKDGv3 60
3BI H21A 5.738 1.502 -2.627 ETKDGv3 61
3BI H22 8.607 2.287 -1.776 ETKDGv3 62
3BI H22A 7.238 3.444 -1.898 ETKDGv3 63
3BI H18 1.675 0.886 0.660 ETKDGv3 64
3BI H18A 2.777 1.648 1.870 ETKDGv3 65
3BI H17 4.452 -0.156 1.530 ETKDGv3 66
3BI H17A 3.414 -0.924 0.269 ETKDGv3 67
3BI HN7 1.246 -2.144 1.062 ETKDGv3 68
3BI H10 -4.437 -0.362 1.747 ETKDGv3 69
3BI H27 9.096 1.961 -5.343 ETKDGv3 70
3BI H28 3.257 3.854 -1.348 ETKDGv3 71
3BI H29 4.166 -4.188 1.892 ETKDGv3 72
3BI H30 8.865 -0.448 1.079 ETKDGv3 73
3BI H7B -4.862 -4.814 0.199 ETKDGv3 74
#