Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 2IU    

Bonds between two atoms of the molecule

Total Number of Bonds: 59


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O11 P2 O P doub 1.48 N N
2 O9 P2 O P sing 1.61 N N
3 P2 O10 P O sing 1.61 N N
4 P2 O8 P O sing 1.61 N N
5 O6 P1 O P doub 1.48 N N
6 O3 P O P doub 1.48 N N
7 O8 P1 O P sing 1.61 N N
8 P1 O7 P O sing 1.61 N N
9 P1 O5 P O sing 1.61 N N
10 C4 O2 C O sing 1.43 N N
11 C4 C3 C C sing 1.53 N N
12 P O5 P O sing 1.61 N N
13 P O2 P O sing 1.61 N N
14 P O4 P O sing 1.61 N N
15 O C O C sing 1.43 N N
16 C3 C C C sing 1.54 N N
17 C3 O1 C O sing 1.44 N N
18 C C1 C C sing 1.54 N N
19 O1 C2 O C sing 1.44 N N
20 C1 C2 C C sing 1.54 N N
21 C13 C14 C C doub 1.38 N Y
22 C13 C12 C C sing 1.39 N Y
23 C2 N C N sing 1.47 N N
24 C14 C15 C C sing 1.39 N Y
25 O14 C12 O C sing 1.35 N Y
26 O14 C9 O C sing 1.35 N Y
27 C12 C11 C C doub 1.41 N Y
28 C5 N C N sing 1.36 N N
29 C5 C6 C C doub 1.37 N N
30 N C8 N C sing 1.34 N N
31 C15 C16 C C doub 1.37 N Y
32 C9 C6 C C sing 1.48 N N
33 C9 C10 C C doub 1.36 N Y
34 C11 C16 C C sing 1.4 N Y
35 C11 C10 C C sing 1.46 N Y
36 C6 C7 C C sing 1.47 N N
37 C8 O13 C O doub 1.22 N N
38 C8 N1 C N sing 1.34 N N
39 C7 N1 C N sing 1.35 N N
40 C7 O12 C O doub 1.22 N N
41 C10 H1 C H sing 1.08 N N
42 C13 H2 C H sing 1.08 N N
43 C15 H3 C H sing 1.08 N N
44 C14 H4 C H sing 1.08 N N
45 C16 H5 C H sing 1.08 N N
46 C H6 C H sing 1.09 N N
47 O H7 O H sing 0.97 N N
48 C1 H8 C H sing 1.09 N N
49 C1 H9 C H sing 1.09 N N
50 C2 H10 C H sing 1.09 N N
51 C3 H11 C H sing 1.09 N N
52 C4 H12 C H sing 1.09 N N
53 C4 H13 C H sing 1.09 N N
54 C5 H14 C H sing 1.08 N N
55 N1 H15 N H sing 0.97 N N
56 O10 H16 O H sing 0.97 N N
57 O4 H17 O H sing 0.97 N N
58 O7 H18 O H sing 0.97 N N
59 O9 H19 O H sing 0.97 N N