Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 2AA    

Bonds between two atoms of the molecule

Total Number of Bonds: 78


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C13 N5 C N sing 1.47 N N
2 C13 H131 C H sing 1.09 N N
3 C13 H132 C H sing 1.09 N N
4 C13 H133 C H sing 1.09 N N
5 N5 C12 N C sing 1.47 N N
6 N5 C11 N C sing 1.39 N N
7 C12 H121 C H sing 1.09 N N
8 C12 H122 C H sing 1.09 N N
9 C12 H123 C H sing 1.09 N N
10 C11 C10 C C doub 1.38 N Y
11 C11 C6' C C sing 1.41 N Y
12 C10 C9' C C sing 1.39 N Y
13 C10 H10 C H sing 1.08 N N
14 C9' C8' C C doub 1.36 N Y
15 C9' H9' C H sing 1.08 N N
16 C8' C7' C C sing 1.41 N Y
17 C8' H8' C H sing 1.08 N N
18 C7' C6' C C doub 1.42 N Y
19 C7' C2' C C sing 1.41 N Y
20 C6' C5' C C sing 1.4 N Y
21 C5' C4' C C doub 1.36 N Y
22 C5' H5' C H sing 1.08 N N
23 C4' C3' C C sing 1.39 N Y
24 C4' H4' C H sing 1.08 N N
25 C3' C2' C C doub 1.36 N Y
26 C3' H3' C H sing 1.08 N N
27 C2' S1 C S sing 1.76 N N
28 S1 O3' S O doub 1.42 N N
29 S1 O4' S O doub 1.42 N N
30 S1 N4 S N sing 1.66 N N
31 N4 C1' N C sing 1.47 N N
32 N4 HN4 N H sing 0.97 N N
33 C1' C9 C C sing 1.53 N N
34 C1' H1'1 C H sing 1.09 N N
35 C1' H1'2 C H sing 1.09 N N
36 C9 O2' C O sing 1.43 N N
37 C9 H91 C H sing 1.09 N N
38 C9 H92 C H sing 1.09 N N
39 O2' P2 O P sing 1.61 N N
40 P2 O1' P O doub 1.48 N N
41 P2 O9 P O sing 1.61 N N
42 P2 O8 P O sing 1.61 N N
43 O9 HO9 O H sing 0.97 N N
44 O8 P1 O P sing 1.61 N N
45 P1 O7 P O doub 1.48 N N
46 P1 O6 P O sing 1.61 N N
47 P1 O5 P O sing 1.61 N N
48 O6 HO6 O H sing 0.97 N N
49 O5 C14 O C sing 1.43 N N
50 C14 C8 C C sing 1.53 N N
51 C14 H141 C H sing 1.09 N N
52 C14 H142 C H sing 1.09 N N
53 C8 O2 C O sing 1.44 N N
54 C8 C7 C C sing 1.54 N N
55 C8 H8 C H sing 1.09 N N
56 O2 C5 O C sing 1.44 N N
57 C7 O4 C O sing 1.43 N N
58 C7 C6 C C sing 1.55 N N
59 C7 H7 C H sing 1.09 N N
60 O4 HO4 O H sing 0.97 N N
61 C6 O3 C O sing 1.43 N N
62 C6 C5 C C sing 1.55 N N
63 C6 H6 C H sing 1.09 N N
64 O3 HO3 O H sing 0.97 N N
65 C5 N3 C N sing 1.46 N N
66 C5 H5 C H sing 1.09 N N
67 N3 C4 N C sing 1.36 N Y
68 N3 C1 N C sing 1.35 N Y
69 C4 C3 C C doub 1.35 N Y
70 C4 H4 C H sing 1.08 N N
71 C3 C2 C C sing 1.41 N Y
72 C3 H3 C H sing 1.08 N N
73 C2 N2 C N sing 1.38 N N
74 C2 N1 C N doub 1.33 N Y
75 N2 HN21 N H sing 0.97 N N
76 N2 HN22 N H sing 0.97 N N
77 N1 C1 N C sing 1.33 N Y
78 C1 O1 C O doub 1.22 N N