Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 2AA

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 75


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 C13 C C13 N N N 0 -1.602 5.067 -0.334
2 N5 N N5 N N N 0 -3.006 4.967 -0.752
3 C12 C C12 N N N 0 -3.27 5.816 -1.922
4 C11 C C11 N Y N 0 -3.358 3.643 -1.008
5 C10 C C10 N Y N 0 -2.696 2.923 -1.98
6 C9' C C9* N Y N 0 -3.039 1.6 -2.243
7 C8' C C8* N Y N 0 -4.035 0.981 -1.551
8 C7' C C7* N Y N 0 -4.734 1.68 -0.552
9 C6' C C6* N Y N 0 -4.39 3.025 -0.27
10 C5' C C5* N Y N 0 -5.085 3.719 0.732
11 C4' C C4* N Y N 0 -6.075 3.091 1.424
12 C3' C C3* N Y N 0 -6.411 1.766 1.153
13 C2' C C2* N Y N 0 -5.766 1.066 0.18
14 S1 S S1 N N N 0 -6.207 -0.609 -0.147
15 O3' O O3* N N N 0 -7.214 -0.949 0.797
16 O4' O O4* N N N 0 -6.393 -0.708 -1.552
17 N4 N N4 N N N 0 -4.89 -1.543 0.218
18 C1' C C1* N N N 0 -4.396 -1.607 1.596
19 C9 C C9 N N N 0 -3.462 -2.809 1.747
20 O2' O O2* N N N 0 -2.3 -2.615 0.938
21 P2 P P2 R N N 0 -1.102 -3.687 0.853
22 O1' O O1* N N N 0 -0.6 -3.974 2.216
23 O9 O O9 N N N 0 -1.643 -5.047 0.184
24 O8 O O8 N N N 0 0.093 -3.086 -0.043
25 P1 P P1 S N N 0 1.637 -3.486 -0.263
26 O7 O O7 N N N 0 2.234 -3.88 1.033
27 O6 O O6 N N N 0 1.73 -4.719 -1.294
28 O5 O O5 N N N 0 2.439 -2.225 -0.861
29 C14 C C14 N N N 0 3.852 -2.228 -1.069
30 C8 C C8 R N N 0 4.286 -0.879 -1.646
31 O2 O O2 N N N 0 4.083 0.157 -0.672
32 C7 C C7 S N N 0 5.792 -0.91 -1.975
33 O4 O O4 N N N 0 6.005 -0.67 -3.367
34 C6 C C6 R N N 0 6.388 0.241 -1.129
35 O3 O O3 N N N 0 7.37 0.966 -1.874
36 C5 C C5 R N N 0 5.142 1.121 -0.854
37 N3 N N3 N Y N 0 5.33 1.917 0.361
38 C4 C C4 N Y N 0 5.302 3.278 0.292
39 C3 C C3 N Y N 0 5.477 4.002 1.422
40 C2 C C2 N Y N 0 5.685 3.326 2.642
41 N2 N N2 N N N 0 5.865 4.037 3.806
42 N1 N N1 N Y N 0 5.705 1.999 2.661
43 C1 C C1 N Y N 0 5.525 1.3 1.541
44 O1 O O1 N N N 0 5.543 0.082 1.586
45 H131 H 1H13 N N N 0 -1.354 6.111 -0.141
46 H132 H 2H13 N N N 0 -1.451 4.484 0.574
47 H133 H 3H13 N N N 0 -0.959 4.681 -1.125
48 H121 H 1H12 N N N 0 -2.635 5.502 -2.75
49 H122 H 2H12 N N N 0 -4.317 5.723 -2.21
50 H123 H 3H12 N N N 0 -3.053 6.855 -1.672
51 H10 H H10 N N N 0 -1.903 3.391 -2.544
52 H9' H H9* N N N 0 -2.508 1.056 -3.01
53 H8' H H8* N N N 0 -4.287 -0.046 -1.769
54 H5' H H5* N N N 0 -4.835 4.746 0.954
55 H4' H H4* N N N 0 -6.609 3.628 2.195
56 H3' H H3* N N N 0 -7.199 1.29 1.717
57 HN4 H HN4 N N N 0 -4.445 -2.048 -0.481
58 H1'1 H 1H1* N N N 0 -3.851 -0.692 1.829
59 H1'2 H 2H1* N N N 0 -5.238 -1.713 2.279
60 H91 H 1H9 N N N 0 -3.165 -2.909 2.791
61 H92 H 2H9 N N N 0 -3.98 -3.714 1.429
62 HO9 H HO9 N N N 0 -1.988 -4.934 -0.712
63 HO6 H HO6 N N N 0 1.357 -4.532 -2.166
64 H141 H 1H14 N N N 0 4.359 -2.397 -0.119
65 H142 H 2H14 N N N 0 4.115 -3.023 -1.767
66 H8 H H8 N N N 0 3.713 -0.66 -2.547
67 HO3 H HO3 N N N 0 8.128 0.432 -2.148
68 H7 H H7 N N N 0 6.227 -1.866 -1.682
69 HO4 H HO4 N N N 0 6.936 -0.679 -3.63
70 H6 H H6 N N N 0 6.81 -0.138 -0.199
71 H5 H H5 N N N 0 4.932 1.766 -1.707
72 H4 H H4 N N N 0 5.141 3.773 -0.654
73 H3 H H3 N N N 0 5.458 5.082 1.39
74 HN21 H 1HN2 N N N 0 5.85 5.006 3.789
75 HN22 H 2HN2 N N N 0 6.008 3.569 4.643