Chemical Components in the PDB

pdbe.org/chem
wwPDB
EMDataBank
spacer

PDBeChem : Chemical Bonds

 Molecule : 18M    

Bonds between two atoms of the molecule

Total Number of Bonds: 48


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 OP2 P O P doub 1.48 N N
2 O5' P O P sing 1.61 N N
3 P OP3 P O sing 1.61 N N
4 P OP1 P O sing 1.61 N N
5 O5' C5' O C sing 1.43 N N
6 C4' C5' C C sing 1.53 N N
7 C5' H5' C H sing 1.09 N N
8 C5' H5'A C H sing 1.09 N N
9 C3' C4' C C sing 1.55 N N
10 O4' C4' O C sing 1.44 N N
11 C4' H4' C H sing 1.09 N N
12 C1' O4' C O sing 1.44 N N
13 C2' C3' C C sing 1.55 N N
14 C3' O3' C O sing 1.43 N N
15 C3' H3' C H sing 1.09 N N
16 O3' P1 O P sing 1.61 N N
17 O2' C2' O C sing 1.43 N N
18 C2' C1' C C sing 1.55 N N
19 C2' H2' C H sing 1.09 N N
20 O2' CM2 O C sing 1.43 N N
21 N9 C1' N C sing 1.47 N N
22 C1' H1' C H sing 1.09 N N
23 C8 N9 C N sing 1.36 N Y
24 C4 N9 C N sing 1.36 N Y
25 N7 C8 N C doub 1.3 N Y
26 C8 H8 C H sing 1.08 N N
27 N7 C5 N C sing 1.35 N Y
28 C6 C5 C C sing 1.47 N N
29 C5 C4 C C doub 1.39 N Y
30 O6 C6 O C doub 1.22 N N
31 C6 N1 C N sing 1.34 N N
32 N1 C2 N C doub 1.32 N N
33 C2 N3 C N sing 1.36 N N
34 C2 N2 C N sing 1.37 N N
35 N2 HN2 N H sing 0.97 N N
36 N2 HN2A N H sing 0.97 N N
37 C4 N3 C N sing 1.37 N N
38 N3 HN3 N H sing 0.97 N N
39 O12 P1 O P doub 1.48 N N
40 P1 O13 P O sing 1.61 N N
41 P1 O11 P O sing 1.61 N N
42 O11 HO11 O H sing 0.97 N N
43 O13 HO13 O H sing 0.97 N N
44 CM2 HM2 C H sing 1.09 N N
45 CM2 HM2A C H sing 1.09 N N
46 CM2 HM2B C H sing 1.09 N N
47 OP1 HOP1 O H sing 0.97 N N
48 OP3 HOP3 O H sing 0.97 N N