data_18M
#
_chem_comp.id 18M
_chem_comp.name "2'-O-methylguanosine 3',5'-bis(dihydrogen phosphate)"
_chem_comp.type "RNA linking"
_chem_comp.pdbx_type ATOMN
_chem_comp.formula "C11 H17 N5 O11 P2"
_chem_comp.mon_nstd_parent_comp_id G
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-11-07
_chem_comp.pdbx_modified_date 2012-11-16
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 457.227
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 18M
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 4HQU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
18M P P P 0 1 N N N N N N 1.660 12.791 8.324 4.395 2.650 0.291 P 18M 1
18M "O5'" "O5'" O 0 1 N N N N N N 3.152 13.288 7.995 3.093 1.804 0.714 "O5'" 18M 2
18M "C5'" "C5'" C 0 1 N N N N N N 3.994 13.729 9.045 2.613 0.687 -0.038 "C5'" 18M 3
18M "C4'" "C4'" C 0 1 N N R N N N 5.410 13.931 8.524 1.365 0.116 0.638 "C4'" 18M 4
18M "O4'" "O4'" O 0 1 N N N N N N 5.887 12.750 7.878 0.261 1.040 0.531 "O4'" 18M 5
18M "C3'" "C3'" C 0 1 N N R N N N 5.530 15.061 7.510 0.863 -1.142 -0.116 "C3'" 18M 6
18M "O3'" "O3'" O 0 1 N N N N N N 6.643 15.883 7.891 1.531 -2.316 0.350 "O3'" 18M 7
18M "C2'" "C2'" C 0 1 N N R N N N 5.895 14.373 6.206 -0.637 -1.172 0.266 "C2'" 18M 8
18M "O2'" "O2'" O 0 1 N N N N N N 6.636 15.249 5.326 -0.860 -2.079 1.347 "O2'" 18M 9
18M "C1'" "C1'" C 0 1 N N R N N N 6.631 13.136 6.719 -0.944 0.277 0.706 "C1'" 18M 10
18M N9 N9 N 0 1 Y N N N N N 6.743 12.000 5.769 -2.013 0.834 -0.127 N9 18M 11
18M C8 C8 C 0 1 Y N N N N N 5.777 11.516 4.963 -1.848 1.597 -1.246 C8 18M 12
18M N7 N7 N 0 1 Y N N N N N 6.234 10.463 4.243 -3.014 1.916 -1.731 N7 18M 13
18M C5 C5 C 0 1 Y N N N N N 7.509 10.253 4.597 -3.981 1.378 -0.952 C5 18M 14
18M C6 C6 C 0 1 N N N N N N 8.573 9.295 4.224 -5.447 1.385 -0.983 C6 18M 15
18M O6 O6 O 0 1 N N N N N N 8.388 8.390 3.374 -6.049 1.979 -1.863 O6 18M 16
18M N1 N1 N 0 1 N N N N N N 9.762 9.425 4.825 -6.112 0.726 -0.021 N1 18M 17
18M C2 C2 C 0 1 N N N N N N 10.015 10.368 5.748 -5.476 0.082 0.934 C2 18M 18
18M N2 N2 N 0 1 N N N N N N 11.260 10.384 6.284 -6.208 -0.572 1.887 N2 18M 19
18M N3 N3 N 0 1 N N N N N N 9.081 11.277 6.140 -4.120 0.042 1.009 N3 18M 20
18M C4 C4 C 0 1 Y N N N N N 7.841 11.265 5.606 -3.351 0.681 0.071 C4 18M 21
18M P1 P1 P 0 1 N N N N N N 6.543 17.144 8.875 2.389 -3.277 -0.616 P1 18M 22
18M O11 O11 O 0 1 N N N N N N 7.303 16.808 10.109 1.413 -3.962 -1.697 O11 18M 23
18M O12 O12 O 0 1 N N N N N N 7.364 18.241 8.058 3.420 -2.479 -1.317 O12 18M 24
18M O13 O13 O 0 1 N N N N N N 5.113 17.560 8.980 3.103 -4.421 0.264 O13 18M 25
18M CM2 CM2 C 0 1 N N N N N N 8.073 15.283 5.394 -2.153 -2.687 1.339 CM2 18M 26
18M OP1 OP1 O 0 1 N N N N N N 1.178 13.522 9.554 4.716 3.745 1.428 OP1 18M 27
18M OP2 OP2 O 0 1 N N N N N N 0.815 12.811 7.067 5.551 1.737 0.145 OP2 18M 28
18M OP3 OP3 O 0 1 N N N N N N 1.909 11.268 8.728 4.120 3.396 -1.109 OP3 18M 29
18M "H5'" "H5'" H 0 1 N N N N N N 3.613 14.681 9.443 2.364 1.009 -1.048 "H5'" 18M 30
18M "H5'A" "H5'A" H 0 0 N N N N N N 4.004 12.975 9.846 3.386 -0.081 -0.081 "H5'A" 18M 31
18M "H4'" "H4'" H 0 1 N N N N N N 6.060 14.168 9.379 1.569 -0.119 1.683 "H4'" 18M 32
18M "H3'" "H3'" H 0 1 N N N N N N 4.590 15.626 7.421 0.988 -1.026 -1.192 "H3'" 18M 33
18M "H2'" "H2'" H 0 1 N N N N N N 4.969 14.048 5.709 -1.245 -1.447 -0.596 "H2'" 18M 34
18M "H1'" "H1'" H 0 1 N N N N N N 7.643 13.442 7.021 -1.243 0.290 1.754 "H1'" 18M 35
18M H8 H8 H 0 1 N N N N N N 4.775 11.914 4.900 -0.897 1.891 -1.665 H8 18M 36
18M HN2 HN2 H 0 1 N N N N N N 11.940 9.713 5.988 -7.177 -0.556 1.851 HN2 18M 37
18M HN2A HN2A H 0 0 N N N N N N 11.498 11.066 6.975 -5.758 -1.053 2.600 HN2A 18M 38
18M HN3 HN3 H 0 1 N N N N N N 9.316 11.961 6.831 -3.693 -0.445 1.731 HN3 18M 39
18M HO11 HO11 H 0 0 N N N N N N 8.104 17.318 10.137 0.712 -4.502 -1.308 HO11 18M 40
18M HO13 HO13 H 0 0 N N N N N N 4.991 18.392 8.538 3.639 -5.038 -0.254 HO13 18M 41
18M HM2 HM2 H 0 1 N N N N N N 8.459 16.002 4.656 -2.243 -3.361 2.190 HM2 18M 42
18M HM2A HM2A H 0 0 N N N N N N 8.385 15.591 6.403 -2.919 -1.914 1.405 HM2A 18M 43
18M HM2B HM2B H 0 0 N N N N N N 8.474 14.282 5.175 -2.284 -3.250 0.414 HM2B 18M 44
18M HOP1 HOP1 H 0 0 N N N N N N 0.342 13.934 9.371 5.490 4.292 1.239 HOP1 18M 45
18M HOP3 HOP3 H 0 0 N N N N N N 1.479 10.699 8.101 3.375 4.011 -1.087 HOP3 18M 46
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
18M OP2 P DOUB N N 1
18M "O5'" P SING N N 2
18M P OP3 SING N N 3
18M P OP1 SING N N 4
18M "O5'" "C5'" SING N N 5
18M "C4'" "C5'" SING N N 6
18M "C5'" "H5'" SING N N 7
18M "C5'" "H5'A" SING N N 8
18M "C3'" "C4'" SING N N 9
18M "O4'" "C4'" SING N N 10
18M "C4'" "H4'" SING N N 11
18M "C1'" "O4'" SING N N 12
18M "C2'" "C3'" SING N N 13
18M "C3'" "O3'" SING N N 14
18M "C3'" "H3'" SING N N 15
18M "O3'" P1 SING N N 16
18M "O2'" "C2'" SING N N 17
18M "C2'" "C1'" SING N N 18
18M "C2'" "H2'" SING N N 19
18M "O2'" CM2 SING N N 20
18M N9 "C1'" SING N N 21
18M "C1'" "H1'" SING N N 22
18M C8 N9 SING Y N 23
18M C4 N9 SING Y N 24
18M N7 C8 DOUB Y N 25
18M C8 H8 SING N N 26
18M N7 C5 SING Y N 27
18M C6 C5 SING N N 28
18M C5 C4 DOUB Y N 29
18M O6 C6 DOUB N N 30
18M C6 N1 SING N N 31
18M N1 C2 DOUB N N 32
18M C2 N3 SING N N 33
18M C2 N2 SING N N 34
18M N2 HN2 SING N N 35
18M N2 HN2A SING N N 36
18M C4 N3 SING N N 37
18M N3 HN3 SING N N 38
18M O12 P1 DOUB N N 39
18M P1 O13 SING N N 40
18M P1 O11 SING N N 41
18M O11 HO11 SING N N 42
18M O13 HO13 SING N N 43
18M CM2 HM2 SING N N 44
18M CM2 HM2A SING N N 45
18M CM2 HM2B SING N N 46
18M OP1 HOP1 SING N N 47
18M OP3 HOP3 SING N N 48
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
18M SMILES ACDLabs 12.01 O=P(O)(O)OCC3OC(n1cnc2c1NC(=NC2=O)N)C(OC)C3OP(=O)(O)O
18M InChI InChI 1.03 InChI=1S/C11H17N5O11P2/c1-24-7-6(27-29(21,22)23)4(2-25-28(18,19)20)26-10(7)16-3-13-5-8(16)14-11(12)15-9(5)17/h3-4,6-7,10H,2H2,1H3,(H2,18,19,20)(H2,21,22,23)(H3,12,14,15,17)/t4-,6-,7-,10-/m1/s1
18M InChIKey InChI 1.03 SKZHCLKZMCYMDN-KQYNXXCUSA-N
18M SMILES_CANONICAL CACTVS 3.370 CO[C@@H]1[C@H](O[P](O)(O)=O)[C@@H](CO[P](O)(O)=O)O[C@H]1n2cnc3C(=O)N=C(N)Nc23
18M SMILES CACTVS 3.370 CO[CH]1[CH](O[P](O)(O)=O)[CH](CO[P](O)(O)=O)O[CH]1n2cnc3C(=O)N=C(N)Nc23
18M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 CO[C@@H]1[C@@H]([C@H](O[C@H]1n2cnc3c2NC(=NC3=O)N)COP(=O)(O)O)OP(=O)(O)O
18M SMILES "OpenEye OEToolkits" 1.7.6 COC1C(C(OC1n2cnc3c2NC(=NC3=O)N)COP(=O)(O)O)OP(=O)(O)O
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
18M "SYSTEMATIC NAME" ACDLabs 12.01 "2'-O-methylguanosine 3',5'-bis(dihydrogen phosphate)"
18M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "[(2R,3R,4R,5R)-5-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-4-methoxy-2-(phosphonooxymethyl)oxolan-3-yl] dihydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
18M 'Create component' 2012-11-07 RCSB
18M 'Initial release' 2012-11-16 RCSB
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
18M P P 7.203 4.803 1
18M "O5'" O 7.664 3.376 2
18M "C5'" C 9.131 3.062 3
18M "C4'" C 9.592 1.634 4
18M "O4'" O 8.708 0.422 5
18M "C3'" C 11.018 1.168 6
18M "O3'" O 12.233 2.048 7
18M "C2'" C 11.015 -0.332 8
18M "O2'" O 12.227 -1.216 9
18M "C1'" C 9.588 -0.793 10
18M N9 N 9.122 -2.219 11
18M C8 C 9.997 -3.426 12
18M N7 N 9.122 -4.633 13
18M C5 C 7.702 -4.176 14
18M C6 C 6.404 -4.926 15
18M O6 O 6.404 -6.426 16
18M N1 N 5.104 -4.176 17
18M C2 C 5.104 -2.676 18
18M N2 N 3.805 -1.926 19
18M N3 N 6.404 -1.926 20
18M C4 C 7.702 -2.676 21
18M P1 P 12.079 3.540 22
18M O11 O 10.586 3.386 23
18M O12 O 11.924 5.032 24
18M O13 O 13.571 3.694 25
18M CM2 C 13.598 -0.608 26
18M OP1 O 8.631 5.264 27
18M OP2 O 6.742 6.231 28
18M OP3 O 5.776 4.342 29
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
18M OP2 P DOUBLE NONE 1
18M "O5'" P SINGLE NONE 2
18M P OP3 SINGLE NONE 3
18M P OP1 SINGLE NONE 4
18M "O5'" "C5'" SINGLE NONE 5
18M "C4'" "C5'" SINGLE BEGINDASH 6
18M "C3'" "C4'" SINGLE NONE 7
18M "O4'" "C4'" SINGLE NONE 8
18M "C1'" "O4'" SINGLE NONE 9
18M "C2'" "C3'" SINGLE NONE 10
18M "C3'" "O3'" SINGLE BEGINWEDGE 11
18M "O3'" P1 SINGLE NONE 12
18M "C2'" "O2'" SINGLE BEGINWEDGE 13
18M "C2'" "C1'" SINGLE NONE 14
18M "O2'" CM2 SINGLE NONE 15
18M "C1'" N9 SINGLE BEGINDASH 16
18M C8 N9 SINGLE NONE 17
18M C4 N9 SINGLE NONE 18
18M N7 C8 DOUBLE NONE 19
18M N7 C5 SINGLE NONE 20
18M C6 C5 SINGLE NONE 21
18M C5 C4 DOUBLE NONE 22
18M O6 C6 DOUBLE NONE 23
18M C6 N1 SINGLE NONE 24
18M N1 C2 DOUBLE NONE 25
18M C2 N3 SINGLE NONE 26
18M C2 N2 SINGLE NONE 27
18M C4 N3 SINGLE NONE 28
18M O12 P1 DOUBLE NONE 29
18M P1 O13 SINGLE NONE 30
18M P1 O11 SINGLE NONE 31
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
18M MurckoScaffold S1 scaffold 'O=c1nc[nH]c2c1ncn2[C@H]1CCCO1' InChI=1S/C9H10N4O2/c14-9-7-8(10-4-11-9)13(5-12-7)6-2-1-3-15-6/h4-6H,1-3H2,(H,10,11,14)/t6-/m1/s1 JBXHFRZBULGPSC-ZCFIWIBFSA-N
18M imidazole F1 fragment 'c1c[nH]cn1' InChI=1S/C3H4N2/c1-2-5-3-4-1/h1-3H,(H,4,5) RAXXELZNTBOGNW-UHFFFAOYSA-N
18M phosphate F2 fragment O=P(O)(O)O InChI=1S/H3O4P/c1-5(2,3)4/h(H3,1,2,3,4) NBIIXXVUZAFLBC-UHFFFAOYSA-N
18M purine F3 fragment 'c1ncc2[nH]cnc2n1' InChI=1S/C5H4N4/c1-4-5(8-2-6-1)9-3-7-4/h1-3H,(H,6,7,8,9) KDCGOANMDULRCW-UHFFFAOYSA-N
18M pyrimidine F4 fragment c1cncnc1 InChI=1S/C4H4N2/c1-2-5-4-6-3-1/h1-4H CZPWVGJYEJSRLH-UHFFFAOYSA-N
18M ribose F5 fragment OCC1OCC(O)C1O InChI=1S/C5H10O4/c6-1-4-5(8)3(7)2-9-4/h3-8H,1-2H2 KZVAAIRBJJYZOW-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
18M "C4'" S1 1
18M "O4'" S1 1
18M "C3'" S1 1
18M "C2'" S1 1
18M "C1'" S1 1
18M N9 S1 1
18M C8 S1 1
18M N7 S1 1
18M C5 S1 1
18M C6 S1 1
18M O6 S1 1
18M N1 S1 1
18M C2 S1 1
18M N3 S1 1
18M C4 S1 1
18M C5 F1 1
18M C4 F1 1
18M N9 F1 1
18M C8 F1 1
18M N7 F1 1
18M "O5'" F2 1
18M P F2 1
18M OP2 F2 1
18M OP3 F2 1
18M OP1 F2 1
18M "O3'" F2 2
18M P1 F2 2
18M O12 F2 2
18M O13 F2 2
18M O11 F2 2
18M N7 F3 1
18M C8 F3 1
18M N9 F3 1
18M C4 F3 1
18M C5 F3 1
18M C6 F3 1
18M N1 F3 1
18M C2 F3 1
18M N3 F3 1
18M C5 F4 1
18M C6 F4 1
18M N1 F4 1
18M C2 F4 1
18M N3 F4 1
18M C4 F4 1
18M "C2'" F5 1
18M "C3'" F5 1
18M "C4'" F5 1
18M "O4'" F5 1
18M "C1'" F5 1
18M "C5'" F5 1
18M "O5'" F5 1
18M "O3'" F5 1
18M "O2'" F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 18M
_pdbe_chem_comp_rdkit_properties.exactmw 457.040
_pdbe_chem_comp_rdkit_properties.amw 457.229
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 16
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 13
_pdbe_chem_comp_rdkit_properties.NumHBD 6
_pdbe_chem_comp_rdkit_properties.NumHBA 15
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 29
_pdbe_chem_comp_rdkit_properties.NumAtoms 46
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 18
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 0
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.545
_pdbe_chem_comp_rdkit_properties.NumRings 3
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 1
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 1
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 3
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 1
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 185.012
_pdbe_chem_comp_rdkit_properties.tpsa 241.570
_pdbe_chem_comp_rdkit_properties.CrippenClogP -1.708
_pdbe_chem_comp_rdkit_properties.CrippenMR 89.259
_pdbe_chem_comp_rdkit_properties.chi0v 14.910
_pdbe_chem_comp_rdkit_properties.chi1v 9.547
_pdbe_chem_comp_rdkit_properties.chi2v 3.580
_pdbe_chem_comp_rdkit_properties.chi3v 3.580
_pdbe_chem_comp_rdkit_properties.chi4v 2.525
_pdbe_chem_comp_rdkit_properties.chi0n 30.121
_pdbe_chem_comp_rdkit_properties.chi1n 14.600
_pdbe_chem_comp_rdkit_properties.chi2n 2.859
_pdbe_chem_comp_rdkit_properties.chi3n 2.859
_pdbe_chem_comp_rdkit_properties.chi4n 1.941
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -1.710
_pdbe_chem_comp_rdkit_properties.kappa1 8.803
_pdbe_chem_comp_rdkit_properties.kappa2 7.847
_pdbe_chem_comp_rdkit_properties.kappa3 4.895
_pdbe_chem_comp_rdkit_properties.Phi 2.382
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
18M UniChem ZINC ZINC000098207929
18M UniChem PubChem 137347943
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
18M P -4.531 3.051 0.135 ETKDGv3 1
18M "O5'" -3.240 2.380 -0.755 ETKDGv3 2
18M "C5'" -2.858 1.172 -0.141 ETKDGv3 3
18M "C4'" -1.668 0.579 -0.901 ETKDGv3 4
18M "O4'" -0.565 1.452 -0.833 ETKDGv3 5
18M "C3'" -1.246 -0.769 -0.334 ETKDGv3 6
18M "O3'" -1.998 -1.806 -0.937 ETKDGv3 7
18M "C2'" 0.215 -0.824 -0.713 ETKDGv3 8
18M "O2'" 0.355 -1.395 -2.006 ETKDGv3 9
18M "C1'" 0.602 0.661 -0.753 ETKDGv3 10
18M N9 1.356 1.035 0.444 ETKDGv3 11
18M C8 0.837 1.112 1.782 ETKDGv3 12
18M N7 1.738 0.955 2.707 ETKDGv3 13
18M C5 2.944 0.747 1.982 ETKDGv3 14
18M C6 4.274 0.418 2.489 ETKDGv3 15
18M O6 4.510 0.362 3.724 ETKDGv3 16
18M N1 5.312 0.152 1.527 ETKDGv3 17
18M C2 5.079 0.194 0.239 ETKDGv3 18
18M N2 6.137 -0.077 -0.679 ETKDGv3 19
18M N3 3.759 0.511 -0.256 ETKDGv3 20
18M C4 2.726 0.778 0.699 ETKDGv3 21
18M P1 -2.102 -3.131 0.133 ETKDGv3 22
18M O11 -0.553 -3.654 0.572 ETKDGv3 23
18M O12 -2.828 -4.263 -0.558 ETKDGv3 24
18M O13 -2.963 -2.684 1.520 ETKDGv3 25
18M CM2 1.551 -2.137 -2.089 ETKDGv3 26
18M OP1 -5.794 1.932 0.272 ETKDGv3 27
18M OP2 -4.054 3.450 1.514 ETKDGv3 28
18M OP3 -5.095 4.427 -0.671 ETKDGv3 29
18M "H5'" -2.554 1.345 0.917 ETKDGv3 30
18M "H5'A" -3.694 0.438 -0.175 ETKDGv3 31
18M "H4'" -1.953 0.461 -1.972 ETKDGv3 32
18M "H3'" -1.340 -0.734 0.780 ETKDGv3 33
18M "H2'" 0.774 -1.379 0.081 ETKDGv3 34
18M "H1'" 1.225 0.874 -1.649 ETKDGv3 35
18M H8 -0.210 1.260 2.009 ETKDGv3 36
18M HN2 5.963 -0.050 -1.708 ETKDGv3 37
18M HN2A 7.094 -0.307 -0.333 ETKDGv3 38
18M HN3 3.571 0.568 -1.280 ETKDGv3 39
18M HO11 -0.706 -4.346 1.264 ETKDGv3 40
18M HO13 -3.779 -2.239 1.178 ETKDGv3 41
18M HM2 1.502 -3.036 -1.436 ETKDGv3 42
18M HM2A 1.679 -2.486 -3.135 ETKDGv3 43
18M HM2B 2.434 -1.516 -1.828 ETKDGv3 44
18M HOP1 -6.519 2.425 0.734 ETKDGv3 45
18M HOP3 -5.386 4.097 -1.558 ETKDGv3 46
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