Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 08T    

Bonds between two atoms of the molecule

Total Number of Bonds: 47


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 O3' C3' O C sing 1.43 N N
2 O2' C2' O C sing 1.43 N N
3 C3' C4' C C sing 1.54 N N
4 C3' C2' C C sing 1.55 N N
5 C4' C5' C C sing 1.53 N N
6 C4' O4' C O sing 1.44 N N
7 C2' C1' C C sing 1.55 N N
8 C5' O5' C O sing 1.43 N N
9 O4' C1' O C sing 1.44 N N
10 C1' N9 C N sing 1.47 N N
11 N3 C2 N C doub 1.32 N Y
12 N3 C4 N C sing 1.33 N Y
13 O2A PA O P doub 1.48 N N
14 C2 N1 C N sing 1.32 N Y
15 O5' PA O P sing 1.61 N N
16 C4 N9 C N sing 1.37 N Y
17 C4 C5 C C doub 1.4 N Y
18 N9 C8 N C sing 1.36 N Y
19 PA O1A P O sing 1.61 N N
20 PA O3A P O sing 1.61 N N
21 N1 C6 N C doub 1.33 N Y
22 C5 C6 C C sing 1.41 N Y
23 C5 N7 C N sing 1.35 N Y
24 O3A PB O P sing 1.61 N N
25 C8 N7 C N doub 1.3 N Y
26 C6 N6 C N sing 1.38 N N
27 O1B PB O P doub 1.48 N N
28 PB O3B P O sing 1.61 N N
29 PB O2B P O sing 1.61 N N
30 F1 BE F BE sing 1.39 N N
31 BE F3 BE F sing 1.39 N N
32 O3B BE O BE sing 1.44 N N
33 BE F2 BE F sing 1.39 N N
34 C5' H1 C H sing 1.09 N N
35 C5' H2 C H sing 1.09 N N
36 C4' H3 C H sing 1.09 N N
37 C3' H4 C H sing 1.09 N N
38 O3' H5 O H sing 0.97 N N
39 C2' H6 C H sing 1.09 N N
40 O2' H7 O H sing 0.97 N N
41 C1' H8 C H sing 1.09 N N
42 O1A H9 O H sing 0.97 N N
43 C2 H10 C H sing 1.08 N N
44 O2B H11 O H sing 0.97 N N
45 N6 H12 N H sing 0.97 N N
46 N6 H13 N H sing 0.97 N N
47 C8 H14 C H sing 1.08 N N