Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 08T

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 BE BE BE N N N 0 6.712 1.379 1.127
2 C1' C C1' R N N 0 -3.342 -0.783 0.606
3 C2 C C2 N Y N 0 -7.372 0.984 1.49
4 C2' C C2' R N N 0 -3.676 -2.109 -0.123
5 C3' C C3' S N N 0 -2.404 -2.952 0.139
6 C4 C C4 N Y N 0 -5.35 0.748 0.424
7 C4' C C4' R N N 0 -1.322 -1.908 0.477
8 C5 C C5 N Y N 0 -5.674 1.833 -0.407
9 C5' C C5' N N N 0 -0.157 -2.027 -0.508
10 C6 C C6 N Y N 0 -6.915 2.466 -0.219
11 C8 C C8 N Y N 0 -3.707 1.134 -0.994
12 F1 F F1 N N N 0 7.031 1.975 2.342
13 F2 F F2 N N N 0 7.466 0.222 0.966
14 F3 F F3 N N N 0 6.992 2.262 0.09
15 H1 H H1 N N N 0 -0.503 -1.78 -1.511
16 H10 H H10 N N N 0 -8.058 0.644 2.252
17 H11 H H11 N N N 0 4.629 2.186 -1.427
18 H12 H H12 N N N 0 -8.148 3.968 -0.869
19 H13 H H13 N N N 0 -6.691 3.865 -1.7
20 H14 H H14 N N N 0 -2.766 1.052 -1.518
21 H2 H H2 N N N 0 0.225 -3.048 -0.497
22 H3 H H3 N N N 0 -0.963 -2.06 1.495
23 H4 H H4 N N N 0 -2.127 -3.512 -0.755
24 H5 H H5 N N N 0 -3.279 -4.515 1.084
25 H6 H H6 N N N 0 -3.819 -1.942 -1.191
26 H7 H H7 N N N 0 -5.023 -3.607 0.09
27 H8 H H8 N N N 0 -3.539 -0.872 1.674
28 H9 H H9 N N N 0 1.54 0.467 -2.414
29 N1 N N1 N Y N 0 -7.721 2.008 0.733
30 N3 N N3 N Y N 0 -6.221 0.361 1.35
31 N6 N N6 N N N 0 -7.288 3.54 -1.008
32 N7 N N7 N Y N 0 -4.629 2.016 -1.249
33 N9 N N9 N Y N 0 -4.105 0.328 0.03
34 O1A O O1A N N N 0 1.962 -0.403 -2.413
35 O1B O O1B N N N 0 5.574 -0.913 -0.463
36 O2' O O2' N N N 0 -4.827 -2.732 0.452
37 O2A O O2A N N N 0 2.906 -2.312 -1.058
38 O2B O O2B N N N 0 5.091 1.339 -1.495
39 O3' O O3' N N N 0 -2.608 -3.837 1.242
40 O3A O O3A N N N 0 3.249 0.022 -0.16
41 O3B O O3B N N N 0 5.312 1.046 1.108
42 O4' O O4' N N N 0 -1.93 -0.61 0.361
43 O5' O O5' N N N 0 0.883 -1.125 -0.127
44 PA P PA N N N 0 2.264 -0.984 -0.942
45 PB P PB N N N 0 4.823 0.346 -0.257