Chemical Components in the PDB

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PDBeChem : Atoms of Molecule

 Molecule : 08T

Atoms of a chemical element, that composes a molecule

Total Number of Atoms: 45


Record Atom Name Symbol PDB Name Stereochemistry Is Aromatic Is Leaving Atom Charge X-Coordinate Y-Coordinate Z-Coordinate
1 PA P PA N N N 0 2.264 -0.984 -0.942
2 PB P PB N N N 0 4.823 0.346 -0.257
3 BE BE BE N N N 0 6.712 1.379 1.127
4 C5' C C5' N N N 0 -0.157 -2.027 -0.508
5 O5' O O5' N N N 0 0.883 -1.125 -0.127
6 C4' C C4' R N N 0 -1.322 -1.908 0.477
7 O4' O O4' N N N 0 -1.93 -0.61 0.361
8 C3' C C3' S N N 0 -2.404 -2.952 0.139
9 O3' O O3' N N N 0 -2.608 -3.837 1.242
10 C2' C C2' R N N 0 -3.676 -2.109 -0.123
11 O2' O O2' N N N 0 -4.827 -2.732 0.452
12 C1' C C1' R N N 0 -3.342 -0.783 0.606
13 N1 N N1 N Y N 0 -7.721 2.008 0.733
14 O1A O O1A N N N 0 1.962 -0.403 -2.413
15 O1B O O1B N N N 0 5.574 -0.913 -0.463
16 F1 F F1 N N N 0 7.031 1.975 2.342
17 C2 C C2 N Y N 0 -7.372 0.984 1.49
18 O2A O O2A N N N 0 2.906 -2.312 -1.058
19 O2B O O2B N N N 0 5.091 1.339 -1.495
20 F2 F F2 N N N 0 7.466 0.222 0.966
21 N3 N N3 N Y N 0 -6.221 0.361 1.35
22 O3A O O3A N N N 0 3.249 0.022 -0.16
23 O3B O O3B N N N 0 5.312 1.046 1.108
24 F3 F F3 N N N 0 6.992 2.262 0.09
25 C4 C C4 N Y N 0 -5.35 0.748 0.424
26 C5 C C5 N Y N 0 -5.674 1.833 -0.407
27 C6 C C6 N Y N 0 -6.915 2.466 -0.219
28 N6 N N6 N N N 0 -7.288 3.54 -1.008
29 N7 N N7 N Y N 0 -4.629 2.016 -1.249
30 C8 C C8 N Y N 0 -3.707 1.134 -0.994
31 N9 N N9 N Y N 0 -4.105 0.328 0.03
32 H1 H H1 N N N 0 -0.503 -1.78 -1.511
33 H2 H H2 N N N 0 0.225 -3.048 -0.497
34 H3 H H3 N N N 0 -0.963 -2.06 1.495
35 H4 H H4 N N N 0 -2.127 -3.512 -0.755
36 H5 H H5 N N N 0 -3.279 -4.515 1.084
37 H6 H H6 N N N 0 -3.819 -1.942 -1.191
38 H7 H H7 N N N 0 -5.023 -3.607 0.09
39 H8 H H8 N N N 0 -3.539 -0.872 1.674
40 H9 H H9 N N N 0 1.54 0.467 -2.414
41 H10 H H10 N N N 0 -8.058 0.644 2.252
42 H11 H H11 N N N 0 4.629 2.186 -1.427
43 H12 H H12 N N N 0 -8.148 3.968 -0.869
44 H13 H H13 N N N 0 -6.691 3.865 -1.7
45 H14 H H14 N N N 0 -2.766 1.052 -1.518