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PDBeChem : Atoms of Molecule
Molecule : 08T
Atoms of a chemical element, that composes a molecule
Total Number of Atoms: 45
Record |
Atom Name |
Symbol |
PDB Name |
Stereochemistry |
Is Aromatic |
Is Leaving Atom |
Charge |
X-Coordinate |
Y-Coordinate |
Z-Coordinate |
1 |
BE |
BE |
BE |
N |
N |
N |
0 |
6.712 |
1.379 |
1.127 |
2 |
C1' |
C |
C1' |
R |
N |
N |
0 |
-3.342 |
-0.783 |
0.606 |
3 |
C2 |
C |
C2 |
N |
Y |
N |
0 |
-7.372 |
0.984 |
1.49 |
4 |
C2' |
C |
C2' |
R |
N |
N |
0 |
-3.676 |
-2.109 |
-0.123 |
5 |
C3' |
C |
C3' |
S |
N |
N |
0 |
-2.404 |
-2.952 |
0.139 |
6 |
C4 |
C |
C4 |
N |
Y |
N |
0 |
-5.35 |
0.748 |
0.424 |
7 |
C4' |
C |
C4' |
R |
N |
N |
0 |
-1.322 |
-1.908 |
0.477 |
8 |
C5 |
C |
C5 |
N |
Y |
N |
0 |
-5.674 |
1.833 |
-0.407 |
9 |
C5' |
C |
C5' |
N |
N |
N |
0 |
-0.157 |
-2.027 |
-0.508 |
10 |
C6 |
C |
C6 |
N |
Y |
N |
0 |
-6.915 |
2.466 |
-0.219 |
11 |
C8 |
C |
C8 |
N |
Y |
N |
0 |
-3.707 |
1.134 |
-0.994 |
12 |
F1 |
F |
F1 |
N |
N |
N |
0 |
7.031 |
1.975 |
2.342 |
13 |
F2 |
F |
F2 |
N |
N |
N |
0 |
7.466 |
0.222 |
0.966 |
14 |
F3 |
F |
F3 |
N |
N |
N |
0 |
6.992 |
2.262 |
0.09 |
15 |
H1 |
H |
H1 |
N |
N |
N |
0 |
-0.503 |
-1.78 |
-1.511 |
16 |
H10 |
H |
H10 |
N |
N |
N |
0 |
-8.058 |
0.644 |
2.252 |
17 |
H11 |
H |
H11 |
N |
N |
N |
0 |
4.629 |
2.186 |
-1.427 |
18 |
H12 |
H |
H12 |
N |
N |
N |
0 |
-8.148 |
3.968 |
-0.869 |
19 |
H13 |
H |
H13 |
N |
N |
N |
0 |
-6.691 |
3.865 |
-1.7 |
20 |
H14 |
H |
H14 |
N |
N |
N |
0 |
-2.766 |
1.052 |
-1.518 |
21 |
H2 |
H |
H2 |
N |
N |
N |
0 |
0.225 |
-3.048 |
-0.497 |
22 |
H3 |
H |
H3 |
N |
N |
N |
0 |
-0.963 |
-2.06 |
1.495 |
23 |
H4 |
H |
H4 |
N |
N |
N |
0 |
-2.127 |
-3.512 |
-0.755 |
24 |
H5 |
H |
H5 |
N |
N |
N |
0 |
-3.279 |
-4.515 |
1.084 |
25 |
H6 |
H |
H6 |
N |
N |
N |
0 |
-3.819 |
-1.942 |
-1.191 |
26 |
H7 |
H |
H7 |
N |
N |
N |
0 |
-5.023 |
-3.607 |
0.09 |
27 |
H8 |
H |
H8 |
N |
N |
N |
0 |
-3.539 |
-0.872 |
1.674 |
28 |
H9 |
H |
H9 |
N |
N |
N |
0 |
1.54 |
0.467 |
-2.414 |
29 |
N1 |
N |
N1 |
N |
Y |
N |
0 |
-7.721 |
2.008 |
0.733 |
30 |
N3 |
N |
N3 |
N |
Y |
N |
0 |
-6.221 |
0.361 |
1.35 |
31 |
N6 |
N |
N6 |
N |
N |
N |
0 |
-7.288 |
3.54 |
-1.008 |
32 |
N7 |
N |
N7 |
N |
Y |
N |
0 |
-4.629 |
2.016 |
-1.249 |
33 |
N9 |
N |
N9 |
N |
Y |
N |
0 |
-4.105 |
0.328 |
0.03 |
34 |
O1A |
O |
O1A |
N |
N |
N |
0 |
1.962 |
-0.403 |
-2.413 |
35 |
O1B |
O |
O1B |
N |
N |
N |
0 |
5.574 |
-0.913 |
-0.463 |
36 |
O2' |
O |
O2' |
N |
N |
N |
0 |
-4.827 |
-2.732 |
0.452 |
37 |
O2A |
O |
O2A |
N |
N |
N |
0 |
2.906 |
-2.312 |
-1.058 |
38 |
O2B |
O |
O2B |
N |
N |
N |
0 |
5.091 |
1.339 |
-1.495 |
39 |
O3' |
O |
O3' |
N |
N |
N |
0 |
-2.608 |
-3.837 |
1.242 |
40 |
O3A |
O |
O3A |
N |
N |
N |
0 |
3.249 |
0.022 |
-0.16 |
41 |
O3B |
O |
O3B |
N |
N |
N |
0 |
5.312 |
1.046 |
1.108 |
42 |
O4' |
O |
O4' |
N |
N |
N |
0 |
-1.93 |
-0.61 |
0.361 |
43 |
O5' |
O |
O5' |
N |
N |
N |
0 |
0.883 |
-1.125 |
-0.127 |
44 |
PA |
P |
PA |
N |
N |
N |
0 |
2.264 |
-0.984 |
-0.942 |
45 |
PB |
P |
PB |
N |
N |
N |
0 |
4.823 |
0.346 |
-0.257 |
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