Chemical Components in the PDB

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PDBeChem : Chemical Bonds

 Molecule : 00K    

Bonds between two atoms of the molecule

Total Number of Bonds: 85


Record First Atom Second Atom First Element Second Element Bond Order Type Bond Length Bond Stereochemistry Is Aromatic
1 C CA C C sing 1.53 N N
2 C H40 C H sing 1.09 N N
3 N HN N H sing 0.97 N N
4 O C O C sing 1.43 N N
5 O HO O H sing 0.97 N N
6 C1 N2 C N sing 1.47 N N
7 C1 H1 C H sing 1.09 N N
8 N1 N2 N N sing 1.37 N N
9 N1 C4 N C sing 1.47 N N
10 C2 C1 C C sing 1.55 N N
11 C2 C3 C C sing 1.55 N N
12 C2 H2 C H sing 1.09 N N
13 C2 H2A C H sing 1.09 N N
14 N2 C7 N C sing 1.35 N N
15 O2 C8 O C doub 1.21 N N
16 C3 N1 C N sing 1.48 N N
17 C3 H3 C H sing 1.09 N N
18 C3 H3A C H sing 1.09 N N
19 N3 HN3 N H sing 1.01 N N
20 N3 HN3A N H sing 1.01 N N
21 C4 C5 C C sing 1.53 N N
22 C4 H4 C H sing 1.09 N N
23 C4 H4A C H sing 1.09 N N
24 C5 C6 C C sing 1.52 N N
25 C5 H5 C H sing 1.09 N N
26 C5 H5A C H sing 1.09 N N
27 C6 N3 C N sing 1.47 N N
28 C6 C9 C C sing 1.53 N N
29 C7 O1 C O doub 1.21 N N
30 C7 C6 C C sing 1.5 N N
31 C8 N C N sing 1.35 N N
32 C8 C1 C C sing 1.51 N N
33 C9 C10 C C sing 1.51 N N
34 C9 H9 C H sing 1.09 N N
35 C9 H9A C H sing 1.09 N N
36 CA N C N sing 1.47 N N
37 CA CB C C sing 1.53 N N
38 CA HA C H sing 1.09 N N
39 CB CG C C sing 1.53 N N
40 CB HB C H sing 1.09 N N
41 CD CE C C sing 1.53 N N
42 CD HD C H sing 1.09 N N
43 CD HDA C H sing 1.09 N N
44 CE NZ C N sing 1.47 N N
45 CE HE C H sing 1.09 N N
46 CG CD C C sing 1.53 N N
47 CG HG C H sing 1.09 N N
48 CX C C C sing 1.51 N N
49 CX OX C O doub 1.21 N N
50 NX CX N C sing 1.35 N N
51 NX HNX N H sing 0.97 N N
52 NZ HNZ N H sing 1.01 N N
53 C10 C15 C C doub 1.38 N Y
54 C10 C11 C C sing 1.38 N Y
55 C11 C12 C C doub 1.38 N Y
56 C11 H11 C H sing 1.08 N N
57 C12 C13 C C sing 1.38 N Y
58 C12 H12 C H sing 1.08 N N
59 C13 H13 C H sing 1.08 N N
60 C14 C13 C C doub 1.38 N Y
61 C14 H14 C H sing 1.08 N N
62 C15 C14 C C sing 1.38 N Y
63 C15 H15 C H sing 1.08 N N
64 C1X NX C N sing 1.47 N N
65 C1X H1X C H sing 1.09 N N
66 C2X C1X C C sing 1.53 N N
67 C2X H2X C H sing 1.09 N N
68 C2X H2XA C H sing 1.09 N N
69 C3X C2X C C sing 1.53 N N
70 C3X H3X C H sing 1.09 N N
71 C3X H3XA C H sing 1.09 N N
72 C4X C3X C C sing 1.53 N N
73 C4X C5X C C sing 1.53 N N
74 C4X H4X C H sing 1.09 N N
75 C4X H4XA C H sing 1.09 N N
76 C5X C6X C C sing 1.53 N N
77 C5X H5X C H sing 1.09 N N
78 C5X H5XA C H sing 1.09 N N
79 C6X C1X C C sing 1.53 N N
80 C6X H6X C H sing 1.09 N N
81 C6X H6XA C H sing 1.09 N N
82 CB H41 C H sing 1.09 N N
83 CE H42 C H sing 1.09 N N
84 CG H43 C H sing 1.09 N N
85 NZ H44 N H sing 1.01 N N