data_00K
#
_chem_comp.id 00K
_chem_comp.name
'(1S,7S)-7-amino-N-[(2R,3S)-7-amino-1-(cyclohexylamino)-2-hydroxy-1-oxoheptan-3-yl]-7-benzyl-8-oxohexahydro-1H-pyrazolo[1,2-a]pyridazine-1-carboxamide'
_chem_comp.type peptide-like
_chem_comp.pdbx_type HETAIN
_chem_comp.formula 'C28 H44 N6 O4'
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms MOL-106
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2010-10-27
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 528.687
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code 00K
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 1A46
_chem_comp.pdbx_subcomponent_list '00U 00V ANL'
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
00K C1 C1 C 0 1 N N S N N N 17.833 -13.042 21.662 -1.501 2.152 -0.984 C1 00U 1
00K N1 N1 N 0 1 N N N N N N 18.852 -15.242 21.444 -2.780 3.240 0.623 N1 00U 2
00K O1 O1 O 0 1 N N N N N N 15.985 -14.290 23.380 -2.826 -0.164 -0.149 O1 00U 3
00K C2 C2 C 0 1 N N N N N N 18.887 -13.071 20.587 -1.217 3.671 -1.083 C2 00U 4
00K N2 N2 N 0 1 N N N N N N 17.775 -14.509 22.048 -2.531 2.013 0.058 N2 00U 5
00K O2 O2 O 0 1 N N N N N N 16.462 -13.962 19.837 -0.211 0.816 0.472 O2 00U 6
00K C3 C3 C 0 1 N N N N N N 19.851 -14.220 21.117 -2.490 4.260 -0.415 C3 00U 7
00K N3 N3 N 0 1 N N N N N N 15.809 -16.730 23.661 -3.842 -0.114 2.499 N3 00U 8
00K C4 C4 C 0 1 N N N N N N 19.327 -16.444 22.156 -4.186 3.311 1.044 C4 00U 9
00K C5 C5 C 0 1 N N N N N N 18.134 -17.230 22.762 -4.455 2.205 2.064 C5 00U 10
00K C6 C6 C 0 1 N N S N N N 17.223 -16.329 23.597 -4.227 0.832 1.443 C6 00U 11
00K C7 C7 C 0 1 N N N N N N 17.032 -14.923 23.046 -3.149 0.868 0.400 C7 00U 12
00K C8 C8 C 0 1 N N N N N N 16.638 -13.061 20.755 -0.251 1.411 -0.584 C8 00U 13
00K C9 C9 C 0 1 N N N N N N 17.415 -16.417 25.123 -5.530 0.355 0.797 C9 00U 14
00K C10 C10 C 0 1 Y N N N N N 18.764 -15.984 25.582 -5.351 -1.052 0.287 C10 00U 15
00K C11 C11 C 0 1 Y N N N N N 19.051 -14.634 25.760 -4.897 -1.269 -1.000 C11 00U 16
00K C12 C12 C 0 1 Y N N N N N 20.391 -14.252 26.076 -4.733 -2.559 -1.467 C12 00U 17
00K C13 C13 C 0 1 Y N N N N N 21.429 -15.178 26.215 -5.023 -3.634 -0.647 C13 00U 18
00K C14 C14 C 0 1 Y N N N N N 21.099 -16.548 26.098 -5.477 -3.417 0.641 C14 00U 19
00K C15 C15 C 0 1 Y N N N N N 19.789 -16.951 25.756 -5.636 -2.127 1.109 C15 00U 20
00K C C C 0 1 N N S N N N 14.496 -10.945 18.713 3.245 1.310 -1.715 C 00V 21
00K N N N 0 1 N N N N N N 15.647 -12.089 20.769 0.822 1.410 -1.400 N 00V 22
00K O O O 0 1 N N N N N N 13.380 -10.684 18.077 3.125 1.116 -3.126 O 00V 23
00K CA CA C 0 1 N N S N N N 14.494 -11.892 19.909 2.037 0.689 -1.011 CA 00V 24
00K CB CB C 0 1 N N N N N N 13.195 -11.615 20.628 1.910 -0.781 -1.417 CB 00V 25
00K CD CD C 0 1 N N N N N N 11.561 -12.220 22.437 0.652 -2.904 -1.024 CD 00V 26
00K CE CE C 0 1 N N N N N N 11.170 -13.351 23.353 -0.478 -3.557 -0.227 CE 00V 27
00K CG CG C 0 1 N N N N N N 12.867 -12.504 21.757 0.779 -1.434 -0.619 CG 00V 28
00K CX CX C 0 1 N N N N N N 15.345 -11.435 17.551 4.507 0.650 -1.223 CX 00V 29
00K OX OX O 0 1 N N N N N N 16.474 -11.089 17.731 5.186 -0.006 -1.985 OX 00V 30
00K NZ NZ N 0 1 N N N N N N 10.038 -13.111 24.235 -0.600 -4.968 -0.616 NZ 00V 31
00K C1X C1X C 0 1 N N N N N N 15.651 -12.333 15.335 6.109 0.147 0.544 C1 ANL 32
00K C6X C6X C 0 1 N N N N N N 15.277 -11.740 13.998 5.806 -1.299 0.940 C2 ANL 33
00K C5X C5X C 0 1 N N N N N N 14.168 -12.561 13.354 7.088 -1.969 1.440 C3 ANL 34
00K C4X C4X C 0 1 N N N N N N 14.599 -13.999 13.180 7.620 -1.208 2.656 C4 ANL 35
00K C3X C3X C 0 1 N N N N N N 14.956 -14.603 14.539 7.922 0.239 2.259 C5 ANL 36
00K C2X C2X C 0 1 N N N N N N 16.039 -13.796 15.250 6.641 0.908 1.759 C6 ANL 37
00K NX NX N 0 1 N N N N N N 14.804 -11.921 16.457 4.881 0.789 0.065 N ANL 38
00K H1 H1 H 0 1 N N N N N N 17.934 -12.293 22.461 -1.874 1.775 -1.936 H1 00U 39
00K H2 H2 H 0 1 N N N N N N 18.466 -13.305 19.598 -0.321 3.939 -0.524 H2 00U 40
00K H2A H2A H 0 1 N N N N N N 19.406 -12.106 20.487 -1.138 3.988 -2.123 H2A 00U 41
00K H3 H3 H 0 1 N N N N N N 20.575 -14.555 20.360 -3.309 4.333 -1.131 H3 00U 42
00K H3A H3A H 0 1 N N N N N N 20.449 -13.911 21.987 -2.281 5.229 0.038 H3A 00U 43
00K HN3 HN3 H 0 1 N N N N N N 15.303 -16.080 24.227 -3.684 -1.035 2.119 HN3 00U 44
00K HN3A HN3A H 0 0 N N N N N N 15.423 -16.739 22.738 -3.030 0.215 3.000 HN3A 00U 45
00K H4 H4 H 0 1 N N N N N N 19.862 -17.093 21.447 -4.382 4.282 1.498 H4 00U 46
00K H4A H4A H 0 1 N N N N N N 20.004 -16.137 22.967 -4.834 3.174 0.178 H4A 00U 47
00K H5 H5 H 0 1 N N N N N N 17.544 -17.663 21.941 -3.784 2.330 2.914 H5 00U 48
00K H5A H5A H 0 1 N N N N N N 18.530 -18.027 23.409 -5.487 2.277 2.408 H5A 00U 49
00K H9 H9 H 0 1 N N N N N N 16.667 -15.766 25.600 -6.331 0.375 1.536 H9 00U 50
00K H9A H9A H 0 1 N N N N N N 17.271 -17.465 25.426 -5.785 1.012 -0.034 H9A 00U 51
00K H11 H11 H 0 1 N N N N N N 18.275 -13.889 25.661 -4.670 -0.430 -1.641 H11 00U 52
00K H12 H12 H 0 1 N N N N N N 20.611 -13.204 26.213 -4.379 -2.729 -2.474 H12 00U 53
00K H13 H13 H 0 1 N N N N N N 22.443 -14.859 26.404 -4.895 -4.642 -1.012 H13 00U 54
00K H14 H14 H 0 1 N N N N N N 21.858 -17.296 26.272 -5.703 -4.256 1.281 H14 00U 55
00K H15 H15 H 0 1 N N N N N N 19.566 -18.000 25.626 -5.986 -1.957 2.117 H15 00U 56
00K HN HN H 0 1 N N N N N N 15.744 -11.408 21.495 0.789 1.885 -2.245 HN 00V 57
00K HO HO H 0 1 N N N N N N 13.555 -10.081 17.364 3.085 0.188 -3.394 HO 00V 58
00K HA HA H 0 1 N N N N N N 14.591 -12.900 19.480 2.170 0.758 0.068 HA 00V 59
00K HB HB H 0 1 N N N N N N 13.255 -10.592 21.027 1.688 -0.846 -2.482 HB 00V 60
00K HD HD H 0 1 N N N N N N 10.780 -12.094 21.672 1.589 -3.420 -0.816 HD 00V 61
00K HDA HDA H 0 1 N N N N N N 11.660 -11.299 23.030 0.430 -2.969 -2.089 HDA 00V 62
00K HE HE H 0 1 N N N N N N 10.910 -14.210 22.717 -0.256 -3.492 0.838 HE 00V 63
00K HG HG H 0 1 N N N N N N 12.823 -13.532 21.368 1.001 -1.369 0.446 HG 00V 64
00K HNZ HNZ H 0 1 N N N N N N 9.871 -13.924 24.793 0.275 -5.454 -0.493 HNZ 00V 65
00K H40 H40 H 0 1 N Y N N N N 14.846 -10.061 19.266 3.284 2.377 -1.497 H40 00V 66
00K H41 H41 H 0 1 N N N N N N 12.386 -11.715 19.889 2.847 -1.297 -1.208 H41 00V 67
00K H42 H42 H 0 1 N N N N N N 12.039 -13.568 23.991 -1.415 -3.040 -0.435 H42 00V 68
00K H43 H43 H 0 1 N N N N N N 13.663 -12.395 22.508 -0.158 -0.917 -0.827 H43 00V 69
00K H44 H44 H 0 1 N N N N N N 10.239 -12.334 24.831 -1.341 -5.422 -0.103 H44 00V 70
00K H6X H6X H 0 1 N N N N N N 16.159 -11.742 13.340 5.058 -1.310 1.732 H2 ANL 71
00K H5X H5X H 0 1 N N N N N N 13.932 -12.135 12.368 7.837 -1.959 0.648 H3 ANL 72
00K H4X H4X H 0 1 N N N N N N 15.479 -14.038 12.521 8.533 -1.685 3.012 H4 ANL 73
00K H3X H3X H 0 1 N N N N N N 15.324 -15.628 14.384 8.671 0.249 1.467 H5 ANL 74
00K H2X H2X H 0 1 N N N N N N 16.980 -13.885 14.688 6.856 1.939 1.477 H6 ANL 75
00K HNX HNX H 0 1 N N N N N N 13.810 -12.010 16.390 4.339 1.313 0.674 HN1 ANL 76
00K H1X H1X H 0 1 N N N N N N 16.596 -11.851 15.626 6.857 0.158 -0.249 H1X ANL 77
00K H2XA H2XA H 0 0 N N N N N N 16.171 -14.192 16.268 5.892 0.898 2.551 H2XA ANL 78
00K H3XA H3XA H 0 0 N N N N N N 14.054 -14.614 15.168 8.302 0.781 3.125 H3XA ANL 79
00K H4XA H4XA H 0 0 N N N N N N 13.776 -14.574 12.731 6.872 -1.219 3.448 H4XA ANL 80
00K H5XA H5XA H 0 0 N N N N N N 13.277 -12.529 13.998 6.873 -3.000 1.723 H5XA ANL 81
00K H6XA H6XA H 0 0 N N N N N N 14.926 -10.708 14.144 5.427 -1.842 0.074 H6XA ANL 82
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
00K C CA SING N N 1
00K C H40 SING N N 2
00K N HN SING N N 3
00K O C SING N N 4
00K O HO SING N N 5
00K C1 N2 SING N N 6
00K C1 H1 SING N N 7
00K N1 N2 SING N N 8
00K N1 C4 SING N N 9
00K C2 C1 SING N N 10
00K C2 C3 SING N N 11
00K C2 H2 SING N N 12
00K C2 H2A SING N N 13
00K N2 C7 SING N N 14
00K O2 C8 DOUB N N 15
00K C3 N1 SING N N 16
00K C3 H3 SING N N 17
00K C3 H3A SING N N 18
00K N3 HN3 SING N N 19
00K N3 HN3A SING N N 20
00K C4 C5 SING N N 21
00K C4 H4 SING N N 22
00K C4 H4A SING N N 23
00K C5 C6 SING N N 24
00K C5 H5 SING N N 25
00K C5 H5A SING N N 26
00K C6 N3 SING N N 27
00K C6 C9 SING N N 28
00K C7 O1 DOUB N N 29
00K C7 C6 SING N N 30
00K C8 N SING N N 31
00K C8 C1 SING N N 32
00K C9 C10 SING N N 33
00K C9 H9 SING N N 34
00K C9 H9A SING N N 35
00K CA N SING N N 36
00K CA CB SING N N 37
00K CA HA SING N N 38
00K CB CG SING N N 39
00K CB HB SING N N 40
00K CD CE SING N N 41
00K CD HD SING N N 42
00K CD HDA SING N N 43
00K CE NZ SING N N 44
00K CE HE SING N N 45
00K CG CD SING N N 46
00K CG HG SING N N 47
00K CX C SING N N 48
00K CX OX DOUB N N 49
00K NX CX SING N N 50
00K NX HNX SING N N 51
00K NZ HNZ SING N N 52
00K C10 C15 DOUB Y N 53
00K C10 C11 SING Y N 54
00K C11 C12 DOUB Y N 55
00K C11 H11 SING N N 56
00K C12 C13 SING Y N 57
00K C12 H12 SING N N 58
00K C13 H13 SING N N 59
00K C14 C13 DOUB Y N 60
00K C14 H14 SING N N 61
00K C15 C14 SING Y N 62
00K C15 H15 SING N N 63
00K C1X NX SING N N 64
00K C1X H1X SING N N 65
00K C2X C1X SING N N 66
00K C2X H2X SING N N 67
00K C2X H2XA SING N N 68
00K C3X C2X SING N N 69
00K C3X H3X SING N N 70
00K C3X H3XA SING N N 71
00K C4X C3X SING N N 72
00K C4X C5X SING N N 73
00K C4X H4X SING N N 74
00K C4X H4XA SING N N 75
00K C5X C6X SING N N 76
00K C5X H5X SING N N 77
00K C5X H5XA SING N N 78
00K C6X C1X SING N N 79
00K C6X H6X SING N N 80
00K C6X H6XA SING N N 81
00K CB H41 SING N N 82
00K CE H42 SING N N 83
00K CG H43 SING N N 84
00K NZ H44 SING N N 85
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
00K SMILES ACDLabs 12.01 'O=C(NC1CCCCC1)C(O)C(NC(=O)C3N2C(=O)C(N)(CCN2CC3)Cc4ccccc4)CCCCN'
00K SMILES_CANONICAL CACTVS 3.370 'NCCCC[C@H](NC(=O)[C@@H]1CCN2CC[C@@](N)(Cc3ccccc3)C(=O)N12)[C@H](O)C(=O)NC4CCCCC4'
00K SMILES CACTVS 3.370 'NCCCC[CH](NC(=O)[CH]1CCN2CC[C](N)(Cc3ccccc3)C(=O)N12)[CH](O)C(=O)NC4CCCCC4'
00K SMILES_CANONICAL 'OpenEye OEToolkits' 1.7.0 'c1ccc(cc1)C[C@@]2(CC[N@@]3CC[C@H](N3C2=O)C(=O)N[C@@H](CCCCN)[C@@H](C(=O)NC4CCCCC4)O)N'
00K SMILES 'OpenEye OEToolkits' 1.7.0 'c1ccc(cc1)CC2(CCN3CCC(N3C2=O)C(=O)NC(CCCCN)C(C(=O)NC4CCCCC4)O)N'
00K InChI InChI 1.03 'InChI=1S/C28H44N6O4/c29-16-8-7-13-22(24(35)26(37)31-21-11-5-2-6-12-21)32-25(36)23-14-17-33-18-15-28(30,27(38)34(23)33)19-20-9-3-1-4-10-20/h1,3-4,9-10,21-24,35H,2,5-8,11-19,29-30H2,(H,31,37)(H,32,36)/t22-,23-,24-,28+/m0/s1'
00K InChIKey InChI 1.03 FYDHYBJQXIEOSE-HXFQDRMMSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
00K 'SYSTEMATIC NAME' ACDLabs 12.01 '(1S,7S)-7-amino-N-[(2S,3S)-7-amino-1-(cyclohexylamino)-2-hydroxy-1-oxoheptan-3-yl]-7-benzyl-8-oxohexahydro-1H-pyrazolo[1,2-a]pyridazine-1-carboxamide'
00K 'SYSTEMATIC NAME' 'OpenEye OEToolkits' 1.7.0 '(3S,6S,9S)-6-azanyl-N-[(2S,3S)-7-azanyl-1-(cyclohexylamino)-2-hydroxy-1-oxo-heptan-3-yl]-5-oxo-6-(phenylmethyl)-2,3,7,8-tetrahydro-1H-pyrazolo[1,2-a]pyridazine-3-carboxamide'
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
00K 'Create component' 2010-10-27 RCSB
00K 'Modify subcomponent list' 2010-11-12 RCSB
00K 'Modify aromatic_flag' 2011-06-04 RCSB
00K 'Modify descriptor' 2011-06-04 RCSB
00K 'Modify synonyms' 2021-03-01 PDBE
00K 'Modify PCM' 2024-09-27 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id 00K
_pdbx_chem_comp_synonyms.name MOL-106
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id 00K
_pdbx_chem_comp_pcm.modified_residue_id SER
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category 'Covalent chemical modification'
_pdbx_chem_comp_pcm.position 'Amino-acid side chain'
_pdbx_chem_comp_pcm.polypeptide_position 'Any position'
_pdbx_chem_comp_pcm.comp_id_linking_atom C
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#
_pdbe_chem_comp_synonyms.comp_id 00K
_pdbe_chem_comp_synonyms.name MOL-106
_pdbe_chem_comp_synonyms.provenance wwPDB
_pdbe_chem_comp_synonyms.type ?
#
loop_
_software.name
_software.version
_software.description
rdkit 2025.03.3 'Core functionality.'
pdbeccdutils 1.0.0 'Wrapper to provide 2D templates and molecular fragments.'
#
loop_
_pdbe_chem_comp_atom_depiction.comp_id
_pdbe_chem_comp_atom_depiction.atom_id
_pdbe_chem_comp_atom_depiction.element
_pdbe_chem_comp_atom_depiction.model_Cartn_x
_pdbe_chem_comp_atom_depiction.model_Cartn_y
_pdbe_chem_comp_atom_depiction.pdbx_ordinal
00K C1 C 11.518 -2.946 1
00K N1 N 10.098 -4.903 2
00K O1 O 8.799 -1.153 3
00K C2 C 12.393 -4.153 4
00K N2 N 10.098 -3.403 5
00K O2 O 10.982 -0.404 6
00K C3 C 11.518 -5.360 7
00K N3 N 6.750 -2.104 8
00K C4 C 8.799 -5.653 9
00K C5 C 7.500 -4.903 10
00K C6 C 7.500 -3.403 11
00K C7 C 8.799 -2.653 12
00K C8 C 11.983 -1.520 13
00K C9 C 6.000 -3.403 14
00K C10 C 5.250 -4.702 15
00K C11 C 6.000 -6.001 16
00K C12 C 5.250 -7.300 17
00K C13 C 3.750 -7.300 18
00K C14 C 3.000 -6.001 19
00K C15 C 3.750 -4.702 20
00K C C 15.385 0.524 21
00K N N 13.451 -1.211 22
00K O O 16.387 -0.592 23
00K CA C 13.917 0.215 24
00K CB C 12.915 1.332 25
00K CD C 12.380 3.874 26
00K CE C 12.846 5.300 27
00K CG C 13.381 2.757 28
00K CX C 15.851 1.950 29
00K OX O 14.849 3.067 30
00K NZ N 11.844 6.416 31
00K C1X C 17.785 3.685 32
00K C6X C 16.783 4.802 33
00K C5X C 17.249 6.228 34
00K C4X C 18.717 6.537 35
00K C3X C 19.718 5.420 36
00K C2X C 19.252 3.995 37
00K NX N 17.319 2.260 38
#
loop_
_pdbe_chem_comp_bond_depiction.comp_id
_pdbe_chem_comp_bond_depiction.atom_id_1
_pdbe_chem_comp_bond_depiction.atom_id_2
_pdbe_chem_comp_bond_depiction.value_order
_pdbe_chem_comp_bond_depiction.bond_dir
_pdbe_chem_comp_bond_depiction.pdbx_ordinal
00K C CA SINGLE NONE 1
00K C O SINGLE BEGINWEDGE 2
00K C1 N2 SINGLE NONE 3
00K N1 N2 SINGLE NONE 4
00K N1 C4 SINGLE NONE 5
00K C2 C1 SINGLE NONE 6
00K C2 C3 SINGLE NONE 7
00K N2 C7 SINGLE NONE 8
00K O2 C8 DOUBLE NONE 9
00K C3 N1 SINGLE NONE 10
00K C4 C5 SINGLE NONE 11
00K C5 C6 SINGLE NONE 12
00K C6 N3 SINGLE BEGINDASH 13
00K C6 C9 SINGLE NONE 14
00K C7 O1 DOUBLE NONE 15
00K C7 C6 SINGLE NONE 16
00K C8 N SINGLE NONE 17
00K C1 C8 SINGLE BEGINDASH 18
00K C9 C10 SINGLE NONE 19
00K CA N SINGLE NONE 20
00K CA CB SINGLE BEGINWEDGE 21
00K CB CG SINGLE NONE 22
00K CD CE SINGLE NONE 23
00K CE NZ SINGLE NONE 24
00K CG CD SINGLE NONE 25
00K CX C SINGLE NONE 26
00K CX OX DOUBLE NONE 27
00K NX CX SINGLE NONE 28
00K C10 C15 SINGLE NONE 29
00K C10 C11 DOUBLE NONE 30
00K C11 C12 SINGLE NONE 31
00K C12 C13 DOUBLE NONE 32
00K C14 C13 SINGLE NONE 33
00K C15 C14 DOUBLE NONE 34
00K C1X NX SINGLE NONE 35
00K C2X C1X SINGLE NONE 36
00K C3X C2X SINGLE NONE 37
00K C4X C3X SINGLE NONE 38
00K C4X C5X SINGLE NONE 39
00K C5X C6X SINGLE NONE 40
00K C6X C1X SINGLE NONE 41
#
loop_
_pdbe_chem_comp_substructure.comp_id
_pdbe_chem_comp_substructure.substructure_name
_pdbe_chem_comp_substructure.id
_pdbe_chem_comp_substructure.substructure_type
_pdbe_chem_comp_substructure.substructure_smiles
_pdbe_chem_comp_substructure.substructure_inchis
_pdbe_chem_comp_substructure.substructure_inchikeys
00K MurckoScaffold S1 scaffold 'O=C(CCNC(=O)[C@@H]1CCN2CCC(Cc3ccccc3)C(=O)N12)NC1CCCCC1' InChI=1S/C24H34N4O3/c29-22(26-20-9-5-2-6-10-20)11-14-25-23(30)21-13-16-27-15-12-19(24(31)28(21)27)17-18-7-3-1-4-8-18/h1,3-4,7-8,19-21H,2,5-6,9-17H2,(H,25,30)(H,26,29)/t19-,21-/m0/s1 DOCOTVOWVJDDGI-FPOVZHCZSA-N
00K amide F1 fragment CC(N)=O InChI=1S/C2H5NO/c1-2(3)4/h1H3,(H2,3,4) DLFVBJFMPXGRIB-UHFFFAOYSA-N
00K cyclohexane F2 fragment C1CCCCC1 InChI=1S/C6H12/c1-2-4-6-5-3-1/h1-6H2 XDTMQSROBMDMFD-UHFFFAOYSA-N
00K peptide F3 fragment NCC=O InChI=1S/C2H5NO/c3-1-2-4/h2H,1,3H2 LYIIBVSRGJSHAV-UHFFFAOYSA-N
00K phenyl F4 fragment c1ccccc1 InChI=1S/C6H6/c1-2-4-6-5-3-1/h1-6H UHOVQNZJYSORNB-UHFFFAOYSA-N
00K Z2856434893 F5 fragment CC(O)CNC1CCCCC1 InChI=1S/C9H19NO/c1-8(11)7-10-9-5-3-2-4-6-9/h8-11H,2-7H2,1H3 HFHPBMVMXFZJNO-UHFFFAOYSA-N
#
loop_
_pdbe_chem_comp_substructure_mapping.comp_id
_pdbe_chem_comp_substructure_mapping.atom_id
_pdbe_chem_comp_substructure_mapping.substructure_id
_pdbe_chem_comp_substructure_mapping.substructure_ordinal
00K C1 S1 1
00K N1 S1 1
00K O1 S1 1
00K C2 S1 1
00K N2 S1 1
00K O2 S1 1
00K C3 S1 1
00K C4 S1 1
00K C5 S1 1
00K C6 S1 1
00K C7 S1 1
00K C8 S1 1
00K C9 S1 1
00K C10 S1 1
00K C11 S1 1
00K C12 S1 1
00K C13 S1 1
00K C14 S1 1
00K C15 S1 1
00K C S1 1
00K N S1 1
00K CA S1 1
00K CX S1 1
00K OX S1 1
00K C1X S1 1
00K C6X S1 1
00K C5X S1 1
00K C4X S1 1
00K C3X S1 1
00K C2X S1 1
00K NX S1 1
00K N2 F1 1
00K C7 F1 1
00K O1 F1 1
00K C6 F1 1
00K N F1 2
00K C8 F1 2
00K O2 F1 2
00K C1 F1 2
00K NX F1 3
00K CX F1 3
00K OX F1 3
00K C F1 3
00K C1X F2 1
00K C2X F2 1
00K C3X F2 1
00K C4X F2 1
00K C5X F2 1
00K C6X F2 1
00K O1 F3 1
00K C7 F3 1
00K C6 F3 1
00K N3 F3 1
00K O2 F3 2
00K C8 F3 2
00K C1 F3 2
00K N2 F3 2
00K C10 F4 1
00K C15 F4 1
00K C14 F4 1
00K C13 F4 1
00K C12 F4 1
00K C11 F4 1
00K CA F5 1
00K C F5 1
00K O F5 1
00K CX F5 1
00K NX F5 1
00K C1X F5 1
00K C2X F5 1
00K C3X F5 1
00K C4X F5 1
00K C5X F5 1
00K C6X F5 1
#
_pdbe_chem_comp_rdkit_properties.comp_id 00K
_pdbe_chem_comp_rdkit_properties.exactmw 528.342
_pdbe_chem_comp_rdkit_properties.amw 528.698
_pdbe_chem_comp_rdkit_properties.lipinskiHBA 10
_pdbe_chem_comp_rdkit_properties.lipinskiHBD 7
_pdbe_chem_comp_rdkit_properties.NumRotatableBonds 14
_pdbe_chem_comp_rdkit_properties.NumHBD 5
_pdbe_chem_comp_rdkit_properties.NumHBA 7
_pdbe_chem_comp_rdkit_properties.NumHeavyAtoms 38
_pdbe_chem_comp_rdkit_properties.NumAtoms 82
_pdbe_chem_comp_rdkit_properties.NumHeteroatoms 10
_pdbe_chem_comp_rdkit_properties.NumAmideBonds 3
_pdbe_chem_comp_rdkit_properties.FractionCSP3 0.679
_pdbe_chem_comp_rdkit_properties.NumRings 4
_pdbe_chem_comp_rdkit_properties.NumAromaticRings 1
_pdbe_chem_comp_rdkit_properties.NumAliphaticRings 3
_pdbe_chem_comp_rdkit_properties.NumSaturatedRings 3
_pdbe_chem_comp_rdkit_properties.NumHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAromaticHeterocycles 0
_pdbe_chem_comp_rdkit_properties.NumSaturatedHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumAliphaticHeterocycles 2
_pdbe_chem_comp_rdkit_properties.NumSpiroAtoms 0
_pdbe_chem_comp_rdkit_properties.NumBridgeheadAtoms 0
_pdbe_chem_comp_rdkit_properties.NumAtomStereoCenters 4
_pdbe_chem_comp_rdkit_properties.NumUnspecifiedAtomStereoCenters 0
_pdbe_chem_comp_rdkit_properties.labuteASA 287.244
_pdbe_chem_comp_rdkit_properties.tpsa 154.020
_pdbe_chem_comp_rdkit_properties.CrippenClogP 0.517
_pdbe_chem_comp_rdkit_properties.CrippenMR 144.098
_pdbe_chem_comp_rdkit_properties.chi0v 18.316
_pdbe_chem_comp_rdkit_properties.chi1v 9.753
_pdbe_chem_comp_rdkit_properties.chi2v 4.167
_pdbe_chem_comp_rdkit_properties.chi3v 4.167
_pdbe_chem_comp_rdkit_properties.chi4v 2.603
_pdbe_chem_comp_rdkit_properties.chi0n 62.316
_pdbe_chem_comp_rdkit_properties.chi1n 31.344
_pdbe_chem_comp_rdkit_properties.chi2n 4.167
_pdbe_chem_comp_rdkit_properties.chi3n 4.167
_pdbe_chem_comp_rdkit_properties.chi4n 2.603
_pdbe_chem_comp_rdkit_properties.hallKierAlpha -2.530
_pdbe_chem_comp_rdkit_properties.kappa1 6.197
_pdbe_chem_comp_rdkit_properties.kappa2 13.015
_pdbe_chem_comp_rdkit_properties.kappa3 6.719
_pdbe_chem_comp_rdkit_properties.Phi 2.122
#
loop_
_pdbe_chem_comp_external_mappings.comp_id
_pdbe_chem_comp_external_mappings.source
_pdbe_chem_comp_external_mappings.resource
_pdbe_chem_comp_external_mappings.resource_id
00K UniChem ZINC ZINC000068735441
00K UniChem PubChem 5289297
#
loop_
_pdbe_chem_comp_rdkit_conformer.comp_id
_pdbe_chem_comp_rdkit_conformer.atom_id
_pdbe_chem_comp_rdkit_conformer.Cartn_x_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_y_rdkit
_pdbe_chem_comp_rdkit_conformer.Cartn_z_rdkit
_pdbe_chem_comp_rdkit_conformer.rdkit_method
_pdbe_chem_comp_rdkit_conformer.rdkit_ordinal
00K C1 1.037 1.628 -0.532 ETKDGv3 1
00K N1 2.365 -0.258 0.185 ETKDGv3 2
00K O1 0.332 1.813 2.293 ETKDGv3 3
00K C2 1.950 1.238 -1.686 ETKDGv3 4
00K N2 1.428 0.725 0.532 ETKDGv3 5
00K O2 -1.036 0.416 -0.511 ETKDGv3 6
00K C3 2.603 -0.081 -1.258 ETKDGv3 7
00K N3 0.324 -0.400 3.900 ETKDGv3 8
00K C4 1.811 -1.588 0.513 ETKDGv3 9
00K C5 1.203 -1.663 1.946 ETKDGv3 10
00K C6 1.295 -0.353 2.794 ETKDGv3 11
00K C7 0.963 0.801 1.881 ETKDGv3 12
00K C8 -0.416 1.447 -0.889 ETKDGv3 13
00K C9 2.724 -0.113 3.363 ETKDGv3 14
00K C10 3.203 -1.184 4.314 ETKDGv3 15
00K C11 3.950 -2.214 3.873 ETKDGv3 16
00K C12 4.412 -3.257 4.813 ETKDGv3 17
00K C13 4.095 -3.179 6.110 ETKDGv3 18
00K C14 3.286 -2.047 6.606 ETKDGv3 19
00K C15 2.865 -1.101 5.758 ETKDGv3 20
00K C -2.484 1.922 -3.642 ETKDGv3 21
00K N -1.081 2.440 -1.684 ETKDGv3 22
00K O -3.799 1.651 -4.052 ETKDGv3 23
00K CA -2.468 2.296 -2.141 ETKDGv3 24
00K CB -3.245 3.609 -1.887 ETKDGv3 25
00K CD -2.365 4.338 0.418 ETKDGv3 26
00K CE -2.769 4.883 1.799 ETKDGv3 27
00K CG -3.574 3.853 -0.401 ETKDGv3 28
00K CX -1.621 0.713 -3.900 ETKDGv3 29
00K OX -0.552 0.846 -4.555 ETKDGv3 30
00K NZ -3.276 3.835 2.685 ETKDGv3 31
00K C1X -1.003 -1.648 -3.205 ETKDGv3 32
00K C6X -1.462 -2.663 -2.128 ETKDGv3 33
00K C5X -0.769 -4.038 -2.243 ETKDGv3 34
00K C4X 0.554 -3.963 -3.013 ETKDGv3 35
00K C3X 0.349 -3.419 -4.441 ETKDGv3 36
00K C2X -0.774 -2.365 -4.546 ETKDGv3 37
00K NX -1.983 -0.566 -3.355 ETKDGv3 38
00K H1 1.225 2.681 -0.224 ETKDGv3 39
00K H2 1.410 1.122 -2.651 ETKDGv3 40
00K H2A 2.735 2.015 -1.816 ETKDGv3 41
00K H3 3.697 -0.042 -1.445 ETKDGv3 42
00K H3A 2.187 -0.913 -1.869 ETKDGv3 43
00K HN3 -0.648 -0.412 3.512 ETKDGv3 44
00K HN3A 0.436 -1.299 4.423 ETKDGv3 45
00K H4 2.624 -2.342 0.426 ETKDGv3 46
00K H4A 1.016 -1.871 -0.213 ETKDGv3 47
00K H5 0.126 -1.922 1.829 ETKDGv3 48
00K H5A 1.643 -2.520 2.496 ETKDGv3 49
00K H9 3.457 -0.005 2.534 ETKDGv3 50
00K H9A 2.736 0.861 3.902 ETKDGv3 51
00K H11 4.217 -2.295 2.826 ETKDGv3 52
00K H12 5.006 -4.084 4.448 ETKDGv3 53
00K H13 4.433 -3.942 6.799 ETKDGv3 54
00K H14 3.036 -1.985 7.657 ETKDGv3 55
00K H15 2.274 -0.273 6.130 ETKDGv3 56
00K HN -0.521 3.248 -2.040 ETKDGv3 57
00K HO -3.801 1.678 -5.045 ETKDGv3 58
00K HA -2.979 1.483 -1.579 ETKDGv3 59
00K HB -4.215 3.562 -2.427 ETKDGv3 60
00K HD -1.639 3.513 0.562 ETKDGv3 61
00K HDA -1.850 5.154 -0.135 ETKDGv3 62
00K HE -3.536 5.681 1.689 ETKDGv3 63
00K HG -3.991 2.925 0.045 ETKDGv3 64
00K HNZ -4.190 3.485 2.318 ETKDGv3 65
00K H40 -2.083 2.787 -4.223 ETKDGv3 66
00K H41 -2.688 4.476 -2.307 ETKDGv3 67
00K H42 -1.877 5.344 2.274 ETKDGv3 68
00K H43 -4.368 4.631 -0.356 ETKDGv3 69
00K H44 -2.602 3.035 2.697 ETKDGv3 70
00K H6X -2.560 -2.827 -2.199 ETKDGv3 71
00K H5X -0.581 -4.446 -1.226 ETKDGv3 72
00K H4X 1.259 -3.305 -2.460 ETKDGv3 73
00K H3X 0.112 -4.262 -5.126 ETKDGv3 74
00K H2X -0.510 -1.633 -5.338 ETKDGv3 75
00K HNX -2.924 -0.658 -2.910 ETKDGv3 76
00K H1X -0.040 -1.206 -2.868 ETKDGv3 77
00K H2XA -1.720 -2.862 -4.856 ETKDGv3 78
00K H3XA 1.307 -2.972 -4.787 ETKDGv3 79
00K H4XA 1.013 -4.974 -3.064 ETKDGv3 80
00K H5XA -1.444 -4.749 -2.768 ETKDGv3 81
00K H6XA -1.262 -2.232 -1.124 ETKDGv3 82
#